BAC Information

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BAC

Clone NameMSMg01-425I11
Chromosome8 (Build37)
Map Location 128,490,016 - 128,490,259
singlet/doubletsinglet
Overlap genenone
Upstream geneTsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891
Downstream geneKcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425I11.T7 (MSMg01no425_i11.b1)MSMg01-425I11.TJ (MSMg01no425_i11.g1)
ACCAG519190AG519191
length7291,048
length of high quality
(start - end)
244 (69 - 312)---
definitionCHROMAT_FILE: MSMg01no425_i11.b1 PHD_FILE: MSMg01no425_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:46 2005CHROMAT_FILE: MSMg01no425_i11.g1 PHD_FILE: MSMg01no425_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCA
GGACATCTTTCTATAACAGTACTCTTGCTTTCTAACAGAAAGATTGACGA
TTCAAACCTCTCCCTGTTCTCCCAAAAGAAACATGTCCTTTACCAAACCT
GTTCTGGTTTGAATCTGAAGCATCCCCTCTGGCTTGTGGTCTGAATGCTC
AGTTCTCAGTTGTTTTGAAGGCCTGAGAGCAGCAACTCCAAGCTTCCACT
GCTGCACCAGCCACAAGGGCTCCACCATATCATATAAAACCCTCTTAACA
GTCTCAACAAAGAATTGTTAATTGAAAGAAAGCAGTCTGAGCAAGCCATG
AGGAATGAGCCAGTAGGCAGCACCCATCCTTGATATCTACATAAGCTCCT
GCCTCCAGGTTCCTGCCCTGCTTTAGTTCCTGTCCTGACTTTCTTCAGTG
ATAGACTATAATGTAGATGCATAAGCCAAATGGACCCTTCCCTCCCCTTC
CCCCAAAGAAATAGAAAGAAAGAAGGACCAAGTGAATAACTGTGAGGTGA
CAACACTGTAACTAAAATTTAACAATTAGTGGAAGGAATCCACTCAGAAG
CAGCTCAATGGAATTGTCAGCAATAGCTGTGGACTTCCTGGATAGAACCA
TTTTATAATGATCCCTGACATAAATCTCCTACCTCTGCCATAATTGACCT
CAAATTCATCATGGATTTTACTTATGGAC
TTCTGTTTTCCGTCAAAGGACGCACAGACCCGCTTTTTCCAAAAATATAG
GGTGAACACTATTAGAAAGGTTTCCCGCGATAATTCCTCTTGCCAGCAAA
TTCACCATTCTCCTCCTTCTTCTCAGCAAGCTCGCCTTCAACACTTCCCA
CTGTACCTTTGCGAATAAATTTTTTCATCAACTCTATACTATTCCATGGT
TATCCCCTTCTTTTCCTACACTATCCCCATCGTATCAACAATCTATTTAT
GCTCTACTGTACGTCCATGCCTCCTACTCCTACCATTCCTTCTCGTCCTA
TCTACATGCCTCCATGTTATTCAGCTTTTCTAGTTTCTCTCATCGTTTCA
CTCTTCTACCTTTCTTTGTAAGCATGCATATCATAGGGTAAATTAACCAC
TTTATTTACTCTCTACGTCTATTATTTGTTGTATGATCTCTCATATGCAC
TCAGTACATCCACCCTGTAGCTCTGTTTTTATCATCTCTTATATTTATCA
ACAGCTTAAAAGCGCTTCCTAATGTTACACTTCCACACCACATCCTTGTT
CCTTTCTAGTTCATCACACTCTTGTTACTGTCGTCCCTGATATAGTCTCG
ACTCTCCCATATTAATACTCGCATTCCGTTTCCACTATTGTCTCCACCAT
ACCTCTTCAGTTACATCTCCTTCTTTTTTATACATTCTAGACATATATCT
CTCTTCGACTATCTCTTGTACTATCATCAATGTCACTACCCAACATAACT
CTCTATTAAAACATATTTTTCTCTTGTCCTACTATCCTTTCATTCTTTTT
TACCCCTTATCTTTTTGCACTCGTTTCTCACTTCGAACTAATAATTCTTC
TATTCTTAATCATCATCCTATATTTATTTTTATCTGCGTTCCAATACTAC
TATCTTCATTCGTTATCCCTATACTTTCTTAATTTTTTCTCCCCACTGCT
GCTCTAATTCTTTATCTCAGCCTCCACCACTACTCCATCTTTATATACAT
TCATTAACCGCTATACATAATATAATGTTTATATCTATCCACCTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_i11.b1 MSMg01no425_i11.b1 CHROMAT_FILE:
MSMg01no425_i11.b1 PHD_FILE: MSMg01no425_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:46 2005
         (244 letters)



>mm_chr8_128489816_128490459
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtactcttgctttctaacagaaagattgacgattcaaacctctccctgttctcccaaaag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 201 gtactcttgctttctaacagaaagattgacgattcaaacctttccctattctcccaaaag 260

                                                                       
Query: 61  aaacatgtcctttaccaaacctgttctggtttgaatctgaagcatcccctctggcttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatgtcctttaccaaacctgttctggtttgaatctgaagcatcccctctggcttgtg 320

                                                                       
Query: 121 gtctgaatgctcagttctcagttgttttgaaggcctgagagcagcaactccaagcttcca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctgaacgctcagttctcagttgttttgaaggcctgagagcagcaactccaagcttcca 380

                                                                       
Query: 181 ctgctgcaccagccacaagggctccaccatatcatataaaaccctcttaacagtctcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctgcaccagccacaagggctccaccatatcatataaaaccctcttaacagtctcaac 440

               
Query: 241 aaag 244
           ||||
Sbjct: 441 aaag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)