BAC Information

Click to search

BAC

Clone NameMSMg01-425K05
Chromosome8 (Build37)
Map Location 111,291,942 - 111,503,266
singlet/doubletdoublet
Overlap geneAtbf1
Upstream geneLOC100041744
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425K05.T7 (MSMg01no425_k05.b1)MSMg01-425K05.TJ (MSMg01no425_k05.g1)
ACCAG519272AG519273
length732757
length of high quality
(start - end)		454 (65 - 518)434 (71 - 504)
definitionCHROMAT_FILE: MSMg01no425_k05.b1 PHD_FILE: MSMg01no425_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:54 2005CHROMAT_FILE: MSMg01no425_k05.g1 PHD_FILE: MSMg01no425_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,291,942 - 111,292,395)(111,502,833 - 111,503,266)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTC
AGTGGAGTTCTCAGGCAGCATGCAACAGGCAAACCCGGCTGTCCATGTGC
TAGTTTCTCATCCGCCTTTTGCTTTTAGAGAGAAACCACTTATCTCAGAA
CAGTGCTCGTAGCATTCGGGTTCCCCAGGACCAATGAGCATCTGAGGTGA
GACGGTCTATCGGTAGATGACAGAATGCCGGAGGTGGCTTTTGGTGCCAC
AGGAGATTTTTATCACCTCCACTGGCTGTCCTGTCTCTGGTCTGGTTAAT
GTTTATAGGCTCCTTCCCTTCTGTTGGAATGAAGGTGACCAGGGCAGTTT
TCCCTAGTAGAACAGCTAGAGTTCACCCCCTACCCCACCCCACAGCTACT
AAGCCAGGGGCAAGGCCTGTCATGTAGGGGCTCAATAATATTAAACGGCA
GTCATTTGGAACAAGATCTTGCTAGTGGGATCATGTTGATTGTAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGCCCTCTCTCTTTCCTTCTCCCCCTTCT
TTTTCTTCTCCCCCCCTTTCCCTTTTTTTCTCTCCCTCTTTTTTTTTTTT
TCTTTCTCTTCCTTTTCNCCTTCTTTTTTTTTTTGATTCTAGTCTTTTTT
TTCTTTCCCGCTCTTTTATCTTTTCTCTCCCTCCCTCTTCATTATTTCAA
AATATTCTTTTACTTCTTCTCCCCTCCCTCCC

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATGGCCCAGGCTCCCTAGCAGCTAACTGTA
GTCATGTAAGTAACTAGGTTTGTGGGCAGTGGTGTATACAAAGTGGTAAG
CACAGCTTGACAACCTCAGAATAGGAGTGCCTCCTCCCTTCACCTTCAAC
TTCATGTGAAAATGTGGCCATAGGAGTGGAAGAAGCCATCTTAACTAAAG
TGGAACCTCTGTGGAAAAAAGAAAGCACAAGGAAAAAGAGAATCAAGGTA
CTTGAAATGCTAGCCCACCTTTGTAATTCCTTTTGGCTGTTTGAGCTACC
ACCCGAGACAAATATCAGCCACTGGCTTGTCTGAACCACTGGTGTCTTTG
ACCTTTGTTAAGAAATCAAATATGAATCCCAGCTTTCAGTGTGCCTACGG
ATGTCGCATCCCACCTCCCAGATTGGGATCATTCAGTACAGATCCTTTCT
GAGAAGTCGGTGTCAGGCAGACAGAATGAGAAGCACGGTGCTTGGGGTCA
CGAAGATGATTTCTTACAAACAAACTAACAAAACTGCTGCTTTGTCTTTG
CAAATTCCGCATTGTGCTTTTATGATGAAAAAACAGCTTGTTCCCCGAAC
CATGGTGTAAAGCTTCCCCGTCACTCCTTTTTAAAAATGCAAAAAAAAAA
AGAAGCCCTGCGGGGTAATACACCACAAAAAGTAAAAGTTGTTGTTCTTA
ATGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_k05.b1 MSMg01no425_k05.b1 CHROMAT_FILE:
MSMg01no425_k05.b1 PHD_FILE: MSMg01no425_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:54 2005
         (454 letters)



>mm_chr8_111291742_111292595
          Length = 854

 Score =  870 bits (450), Expect = 0.0
 Identities = 453/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagcatgcaacaggcaaacccggctgtccatgtgctagtttctcatccgccttttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagcatgcaacaggcaaacccggctgtccatgtgctagtttctcatccgccttttgctt 260

                                                                       
Query: 61  ttagagagaaaccacttatctcagaacagtgctcgtagcattcgggttccccaggaccaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttagagagaaaccacttatctcagaacagtgcttgtagcattcgggttccccaggaccaa 320

                                                                       
Query: 121 tgagcatctgaggtgagacggtctatcggtagatgacagaatgccggaggtggcttttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcatctgaggtgagacggtctatcggtagatgacagaatgccggaggtggcttttgg 380

                                                                       
Query: 181 tgccacaggagatttttatcacctccactggctgtcctgtctctggtctggttaatgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccacaggagatttttatcacctccactggctgtcctgtctctggtctggttaatgttt 440

                                                                       
Query: 241 ataggctccttcccttctgttggaatgaaggtgaccagggcagttttccctagtagaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggctccttcccttctgttggaatgaaggtgaccagggcagttttccctagtagaaca 500

                                                                       
Query: 301 gctagagttcaccccctaccccaccccacagctactaagccaggggcaaggcctgtcatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagagttcaccccctaccccaccccacagctactaagccaggggcaaggcctgtcatg 560

                                                                       
Query: 361 taggggctcaataatattaaacggcagtcatttggaacaagatcttgctagtgggatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggggctcaataatattaaacggcagtcatttggaacaagatcttgctagtgggatcat 620

                                             
Query: 421 gttgattgtagtgtgtgtgtgtgtgtgtgtgtgt 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgattgtagtgtgtgtgtgtgtgtgtgtgtgt 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_k05.g1 MSMg01no425_k05.g1 CHROMAT_FILE:
MSMg01no425_k05.g1 PHD_FILE: MSMg01no425_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:55 2005
         (434 letters)



>mm_chr8_111502633_111503466
          Length = 834

 Score =  839 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcccaggctccctagcagctaactgtagtcatgtaagtaactaggtttgtgggcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atggcccaggctccctagcagctaactgtagtcatgtaagtaactaggtttgtgggcagt 575

                                                                       
Query: 61  ggtgtatacaaagtggtaagcacagcttgacaacctcagaataggagtgcctcctccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggtgtatacaaagtggtaagcacagcttgacaacctcagaataggagtgcctcctccctt 515

                                                                       
Query: 121 caccttcaacttcatgtgaaaatgtggccataggagtggaagaagccatcttaactaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 caccttcaacttcatgtgaaaatgtggccataggagtggaagaagccatcttaactaaag 455

                                                                       
Query: 181 tggaacctctgtggaaaaaagaaagcacaaggaaaaagagaatcaaggtacttgaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tggaacctctgtggaaaaaagaaagcacaaggaaaaagagaatcaaggtacttgaaatgc 395

                                                                       
Query: 241 tagcccacctttgtaattccttttggctgtttgagctaccacccgagacaaatatcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tagcccacctttgtaattccttttggctgtttgagctaccacccgagacaaatatcagcc 335

                                                                       
Query: 301 actggcttgtctgaaccactggtgtctttgacctttgttaagaaatcaaatatgaatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 actggcttgtctgaaccactggtgtctttgacctttgttaagaaatcaaatatgaatccc 275

                                                                       
Query: 361 agctttcagtgtgcctacggatgtcgcatcccacctcccagattgggatcattcagtaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agctttcagtgtgcctacggatgtcgcatcccacctcccagattgggatcattcagtaca 215

                         
Query: 421 gatcctttctgaga 434
           ||||||||||||||
Sbjct: 214 gatcctttctgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |