Query= MSMg01no425_n19.b1 MSMg01no425_n19.b1 CHROMAT_FILE:
MSMg01no425_n19.b1 PHD_FILE: MSMg01no425_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:12 2005
(601 letters)
>mm_chr8_63801540_63802540
Length = 1001
Score = 845 bits (437), Expect = 0.0
Identities = 446/449 (99%), Gaps = 1/449 (0%)
Strand = Plus / Minus
Query: 154 agcccttcatttatttgggtatctaggcatgtgtgcatcttgtatgagttcctgtgggca 213
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1001 agcccttcatttatttgggtatctaggcatgtgtgcatcttgtttgagttcctttgggca 942
Query: 214 tgtgcacc-gtgtagaggccaaaggacaattaattctggggagttggttctcatctttca 272
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 tgtgcaccagtgtagaggccaaaggacaattaattctggggagttggttctcatctttca 882
Query: 273 ccatggtcctggggattgaactcgggtcactggccttccatagcaagcacctctacccac 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ccatggtcctggggattgaactcgggtcactggccttccatagcaagcacctctacccac 822
Query: 333 tgagccatcccaccaaccccatacaatgtacttaatggttattaaatacaaagctttagt 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tgagccatcccaccaaccccatacaatgtacttaatggttattaaatacaaagctttagt 762
Query: 393 ctcagagtgtctaagttagatcattactcaaatatgatttgagatgtatcaattttaata 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ctcagagtgtctaagttagatcattactcaaatatgatttgagatgtatcaattttaata 702
Query: 453 tcatgccccgttatagtattgggagtctcaagtctccccttactttgtcatttccttcaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcatgccccgttatagtattgggagtctcaagtctccccttactttgtcatttccttcaa 642
Query: 513 cgtttatttgtaaagatcgctgtactatatgatgtttatctggtgaccatttccttaagt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cgtttatttgtaaagatcgctgtactatatgatgtttatctggtgaccatttccttaagt 582
Query: 573 ttctgaaatctcacttatcgtacccctga 601
|||||||||||||||||||||||||||||
Sbjct: 581 ttctgaaatctcacttatcgtacccctga 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_n19.g1 MSMg01no425_n19.g1 CHROMAT_FILE:
MSMg01no425_n19.g1 PHD_FILE: MSMg01no425_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:12 2005
(468 letters)
>mm_chr8_63632422_63633289
Length = 868
Score = 462 bits (239), Expect = e-134
Identities = 327/393 (83%), Gaps = 63/393 (16%)
Strand = Plus / Plus
Query: 127 tacagtatattttattacataataaataata---------aa-ataatatagtataatat 176
||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 288 tacagtatattttattacataataaataataatataatataatataatataatataatat 347
Query: 177 aatatattcc--tatatatatttcccttagagataggtctcatacatgtggtttttattg 234
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 348 aatatattcctatatatatatttcccttagagataggtgtcatacatgtggtttttattg 407
Query: 235 ttattatatctacaataatgcatttataatgcttcaggatac------------------ 276
|||| |||||||||||||||||||||||||||
Sbjct: 408 ttat-----------taatgcatttataatgcttcaggatacattatatatatatatata 456
Query: 277 ------------------tatatat--atatatg-agtgaatgcttaaccaaaatattca 315
||||||| ||||||| | |||||||||||||||||||||||
Sbjct: 457 tatatacacacacacacatatatatacatatatgta-tgaatgcttaaccaaaatattca 515
Query: 316 ataagagcaatgtatatagcctctccttgttaggatgtaactcgaaggcctatcagttac 375
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 516 ataagagcaatgtatatagcctctccttgttaggatgtaactcaaaggcctatcagttac 575
Query: 376 cacaggcagtttactcttcctcaggtttaggaaaagccttgatgataatctataatctat 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cacaggcagtttactcttcctcaggtttaggaaaagccttgatgataatctataatctat 635
Query: 436 ttatgtttcacagttaatagcacaccttatatt 468
|||||||||||||||||||||||||||||||||
Sbjct: 636 ttatgtttcacagttaatagcacaccttatatt 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
