BAC Information

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BAC

Clone NameMSMg01-426A03
Chromosome8 (Build37)
Map Location 106,932,466 - 106,932,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4
Downstream geneDync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A03.T7 (MSMg01no426_a03.b1)MSMg01-426A03.TJ (MSMg01no426_a03.g1)
ACCAG519553AG519554
length836780
length of high quality
(start - end)
85 (134 - 218)501 (69 - 569)
definitionCHROMAT_FILE: MSMg01no426_a03.b1 PHD_FILE: MSMg01no426_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:23 2005CHROMAT_FILE: MSMg01no426_a03.g1 PHD_FILE: MSMg01no426_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGTTCGCTATACGATCACTATATTTCGACGATCCGCGGAATTCTG
TGAAACTTTCCGTTCCCTGATGTAACGATTTTCAAACAATTAAGAATTGA
GACATGGGGCACAGCACAGCACAGTCCTAATGGCCCAGGTGCATGCTGCG
TGTTCTCATCTTGGAAACAGTGTAATAACTGTACAGTGGTCATTCCAGAT
TAATGCTTGACTTGCAAAGAAAGTGTTGACGAAATTATTAGAAAATGAAA
TAGAGCCAACATTGGAACCCCAAGAAAGGAAAAACTATTGAAGTTATGAA
ATAAGTTTTACTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAG
AGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGGTCTACAGACGGAGT
TCGAGGATAGCGCAGGCCTACCGAGAGAAACCCTGTCTCATAAAACCATC
TAAGAAATAAGATATAAGTTTTACACTAATTTTCAAAAAGGTTCCCTGTA
TTACCAGTTATATAATATGTTAACGCCTTATCTTATTTACATTTATTTTA
AAATTCTTGGGTATTCTTACGTTTAATTTCCTTTTTGCAAATATGCTAAA
CCAATATTGTTTCTTGTAGTTTAAGTGTCTTTCCTTTATTCCCTCTCTGT
TTCCTGCCACTACTATCTTTCCCCCTACCACTTTATTATTTTATTTTTCC
TCTCTCTTATCCTTAATAATATCTTTCTTCTTCGTTTCATTCTCTTTTTG
TCAAATTCTAATTTAATCATATCTCCTCTTCTTATTTTATCCTCCTACAT
ACTCTTATATTTATTTTTTTTTTCACTCTTAGCTTG
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGCAGGAGTGGTTGGTTTAAGGGTTAGAGC
TAACTGCTGTTTCTGTTAAAAAAAAAAAAAAAAAAAATGTCCCTTTGGCC
AGAAAAATGCTTTCCGAGGCTTCTCTAAAAATAGTGCTTGCTGGGATTTT
CCAGTTTGACATTCCTTCTGTGACCAAGGACAACTCAACCCAACCCATCC
TGTACCCCTTATCGGTTTCCAGTGACATCCCACCACTGGGAGATGCCACT
TTTTGTGTCTCCAGGTGCCTTCATAGCCTGCTGGCATTTGGTGCTGCCAG
GGGAATTCTGGTTGCCTTCCTCCTTCTCCTGGGCAAAGGCTAGAAATGTG
GCCACAAGGAAAAGTGCAAAACTGACTTTGTTTATCCCCAAGACTGGTGT
CCTGTGGGCCAAATGGTGACTCATCCAGCCATGGGAGCCTCAGGAAGCCA
TTGAGGTAACCAGCAGGAGACACCCACAGCCCGGCATGTGCTGGTGGCTC
GCTCACCCCAAGCGCCAGGCTATGTACTGGGACCAATAGGCTCTTGCATG
AGAACCAGGTTTGGGGAATAACGGTGTAACTTTAACGATCCCGCTTCACA
TCCAACCTAATGGCAAAGACAGGGCTCTCCCCCATGTCCCGGAACAAAGA
GGTCCCCCTCTGTAAAAAAGAATTAAAAATACCCCTCCTTTCCCCCTAGG
TTCGGACACTTTCAAAGTTTTCTTCTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a03.g1 MSMg01no426_a03.g1 CHROMAT_FILE:
MSMg01no426_a03.g1 PHD_FILE: MSMg01no426_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:23 2005
         (501 letters)



>mm_chr8_106932261_106933161
          Length = 901

 Score =  922 bits (477), Expect = 0.0
 Identities = 493/501 (98%), Gaps = 5/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaggagtggttggtttaagggttagagctaactgctgtttctgttaaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caggcaggagtggttggtttaagggttagagctaactgctgtttctgttaaaaaaaaaaa 265

                                                                       
Query: 61  aaaaaaaaatgtccctttggccagaaaaatgctttccgaggcttctctaaaaatagtgct 120
           ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaa-----tgtccctttggccagaaaaatgctttccgaggcttctctaaaaatagtgct 320

                                                                       
Query: 121 tgctgggattttccagtttgacattccttctgtgaccaaggacaactcaacccaacccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgggattttccagtttgacattccttctgtgaccaaggacaactcaacccaacccat 380

                                                                       
Query: 181 cctgtaccccttatcggtttccagtgacatcccaccactgggagatgccactttttgtgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cctgtaccccttatcggtttccagtgacatcccaccactgggagatgccactatttgtgt 440

                                                                       
Query: 241 ctccaggtgccttcatagcctgctggcatttggtgctgccaggggaattctggttgcctt 300
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ccccaggtgccttcatagcctgctggcatttggtgctgtcaggggaattctggttgcctt 500

                                                                       
Query: 301 cctccttctcctgggcaaaggctagaaatgtggccacaaggaaaagtgcaaaactgactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctccttctcctgggcaaaggctagaaatgtggccacaaggaaaagtgcaaaactgactt 560

                                                                       
Query: 361 tgtttatccccaagactggtgtcctgtgggccaaatggtgactcatccagccatgggagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttatccccaagactggtgtcctgtgggccaaatggtgactcatccagccatgggagc 620

                                                                       
Query: 421 ctcaggaagccattgaggtaaccagcaggagacacccacagcccggcatgtgctggtggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaggaagccattgaggtaaccagcaggagacacccacagcccggcatgtgctggtggc 680

                                
Query: 481 tcgctcaccccaagcgccagg 501
           |||||||||||||||||||||
Sbjct: 681 tcgctcaccccaagcgccagg 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)