BAC Information

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BAC

Clone NameMSMg01-426A10
Chromosome8 (Build37)
Map Location 61,050,251 - 61,050,723
singlet/doubletsinglet
Overlap gene4930431L04Rik
Upstream geneGalnt7, LOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A10.T7 (MSMg01no426_a10.b1)MSMg01-426A10.TJ (MSMg01no426_a10.g1)
ACCAG519567AG519568
length843757
length of high quality
(start - end)
189 (45 - 233)474 (77 - 550)
definitionCHROMAT_FILE: MSMg01no426_a10.b1 PHD_FILE: MSMg01no426_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:24 2005CHROMAT_FILE: MSMg01no426_a10.g1 PHD_FILE: MSMg01no426_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAAAATTACGCTGGAAAGCTTTCAACATATTTTACTTACAGGAGT
CTATTGTTCAGTGTGTCAGTTAAAACTGAGAGAGAGAGAGACAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAAAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTTTTCTCTCTCCCTCTC
TCTTCTCTTTTTCTCTGTGTGGCCCGCTCGGCGTTCTGTTCTTTCTTGTC
TGCTGTCTGTGCCGCCTGTGTTTTTTTTTTTTTTTTCCCTTTCTTTTTTG
TCTCGTTCTTCCCGGGTTTCCTTTTCTCCCTCTTGCGTCTCGTTCGTCTC
ATTTCTCTCTTTTCCTCTTTCTTCTGCTTCCCCCCTCTCGTCTTTCTCCC
TTCCCTCTTCTACCCGTCTTGCTATTTCCTTTCCTCCTTCCCTGTTCTTC
TCCCTCTCTCTCGTCTCGTTTCTCGTTCCCTCTCTTTTCCCCGTCCTCCC
CCCCTTTTCTTCTTGTTTCTCCTCCCCTCTTTTCTCCCCGCTCTTCCTCC
CACTTTCTACTTTCTCTAGTTCTTCCTCTTCTTTCTTCCTTTTTCTTTAT
CTTTTCCCTCTCTCCCCTCTCATCTTTGTACCCTACCTCTCTTTTCATCC
ATCTTTTCTCCTCCTCTTTCCTCTCTCATTCATATCTTCTTTTCATCCTC
TCTTTTTACCCTCCTATAATCGCTCCTCTCAGTCCCCTACTTCTCTCCCT
CTTGCCCCTATCCTCTCTCTCTCTTTCCTTTCCTTCCTTCCCT
NGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTGTGAGGATCTTTTGACACA
ATTCACATTCATTTCAAAAAGCTTAAGTGTGCTCTGGCCACAGGTTTATT
CTGAGAAGGGCCATAGGGCATTGCATACAAGTGTGCAGTATGGAACACAA
GAATCCATGTTATTTCAAAGCCTCAGGAATTGTACTGAAAGTAGAATATA
TCCACTCAAGTTTTTAAAAATCATTACTCTGGAAAATATGCAGCAATTTC
ACAGAAGGGAAACACATGCACTTCTGATCTACAGATCTGATGAATTTTAG
AAGCAACATGTAGTTCATTTTTTAACTTGGGTGCTGAGAGCCAAAACCAA
CCAAAGAATACTTTGATGACATTTGGATTATGCTGTTAATAGTAAACAGG
CAATATTTTAAGGATATAAATTGATCCCTGGGTAAATGTTGGGATTGTTT
CTAAACACAGCGGTGTGACCAACTCTTTTACCATATTTGATTATCCCTGG
CTTACATCCAAGCCCCAATTGCTGTTAATTATCTTGCCCCAACCAAAAGA
TAGATGTTATGGAATGCCTCTGGATTTCAAAGCCGGGCCTTTATGTTTTT
GGGGATATTTCTGAAATCTCTTTTACTGTTCGCTTTCTCCCTGTTCTTCT
TTTCCCCAATCTTTGAGCCCTTTCGGACATTCTTTACCCTTTTATTCCTT
AAGGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a10.g1 MSMg01no426_a10.g1 CHROMAT_FILE:
MSMg01no426_a10.g1 PHD_FILE: MSMg01no426_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:24 2005
         (474 letters)



>mm_chr8_61050051_61050924
          Length = 874

 Score =  907 bits (469), Expect = 0.0
 Identities = 472/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctgtgaggatcttttgacacaattcacattcatttcaaaaagcttaagtgtgctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgcctgtgaggatcttttgacacaattcacattcatttcaaaaagcttaagtgtgctctg 614

                                                                       
Query: 61  gccacaggtttattctgagaagggccatagggcattgcatacaagtgtgcagtatggaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gccacaggtttattctgagaagggccatagggcattgcatacaagtgtgcagtatggaac 554

                                                                       
Query: 121 acaagaatccatgttatttcaaagcctcaggaattgtactgaaagtagaatatatccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 acaagaatccatgttatttcaaagcctcaggaattgtactgaaagtagaatatatccact 494

                                                                       
Query: 181 caagtttttaaaaatcattactctggaaaatatgcagcaatttcacagaagggaaacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caagtttttaaaaatcattactctggaaaatatgcagcaatttcacagaagggaaacaca 434

                                                                       
Query: 241 tgcacttctgatctacagatctgatgaattttagaagcaacatgtagttcattttttaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgcacttctgatctacagatctgatgaattttagaagcaacatgtagttcattttttaac 374

                                                                       
Query: 301 ttgggtgctgagagccaaaaccaaccaaagaatactttgatgacatttggattatgctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgggtgctgagagccaaaaccaaccaaagaatactttgatgacatttggattatgctgt 314

                                                                       
Query: 361 taatagtaaacaggcaatattttaaggatataaattgatccctgggtaaatgttgggatt 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 313 taatagtaaacaggcaatattttaaggatataaattgatctctgggtaaatgttgggatt 254

                                                                
Query: 421 gtttctaaacacagcggtgtgaccaactcttttaccatatttgattatccctg 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtttctaaacacagcggtgtgaccaactcttttaccatatttgattatccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)