BAC Information

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BAC

Clone NameMSMg01-428A21
Chromosome8 (Build37)
Map Location 6,790,560 - 6,790,775
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428A21.T7 (MSMg01no428_a21.b1)MSMg01-428A21.TJ (MSMg01no428_a21.g1)
ACCAG521109AG521110
length766669
length of high quality
(start - end)		620 (44 - 663)217 (78 - 294)
definitionCHROMAT_FILE: MSMg01no428_a21.b1 PHD_FILE: MSMg01no428_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:07 2005CHROMAT_FILE: MSMg01no428_a21.g1 PHD_FILE: MSMg01no428_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATTTTTCCCAGACTTTTATCATGAATTGGATTTTGTCAAATGCT
TTCTCTGCATTTAACATGATGATCATGTGTTTTTTGTTTTGAGTTTGTTT
ATATAATGGATTACGTTGATGGATTTCCGTATATTGAACCATCCCTGCAT
CCCTGGAATGAAACCTACTTGGTCAGGATGGATGTTTGTTTTAATGTGTT
CTTGGATTCGGTTAGCAAGAATTTTATTGAGTATTTTTGCATCGTTATTC
ATAAGGGAAATTGATCTGAAGTCCTCTATCTTTGTTGGATCTTTCTGTGG
TTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAACTGGGTAGAGTAC
TGTCTGCTTCTATTTTGTGGAATAGTTTGTGCAGAACTGGAATTAGATCT
TCTTTGAAGTTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTAGGCT
ATTTTTGGTTGGTAGACTATTAATGACTGCTTCTATTTCTTTAGGGAATA
TGGGACTGTTTAGATCATTAACTTGATCCTGATTTAACTTTGGTACCTGG
TAAGTGTCTAGAACTGTGTCCATTTCATCCATGTTTTCCAGTTTTGTTGA
GTATAGGCTTTTGTGGAAGAATCTGATGGNGTTTTGGATTTCTTCAGGAT
CTGTTGTTATGTTTCCCTTTTCATTTCTGATTTTGCTTAATAGGATGTTG
TCCCTGGTGCCTCTAC

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGATCTCTGGCACATATGTTTAA
AAAAAATTGTGTAAAAGCAAGTTTCTATAACATAGCACCAGAGAGCAGAG
ACAGGAGGCTGCTTCGGCTTGCAGAATAGTCCCCATAGCTAAGACATAGA
TATTCATACTGGGCTGGGAAGATGCTCAGAGGTTGAATGGGTTCTGCACT
TGCAGAGGTCTTCTGTTAGGTTCCCAGAAGTCAGGTGGCTTACAGGCAAC
TATTAACTTCCGCTACAGGGACATGTGATACTTCATCTGGACCCTGGAGG
CACTGGGCCCTATGGACCAAACCCTCCCAGGCCGGGTCCCAATTTTAGAA
AATAATTTAGAAATTTTTTTTTTAAAACCCTAAGGGGCCCAGGAGAAACN
CTTTAAAATTTTGCCAAAAAACCTGGTGGGGGGGTTTTTAAAAATTGAAA
AGGCGCTTGGGGGCAAAGGGGGGGGGCCCCCCCCGGGGGGGCAAATTTTT
TTTTTTTTCGGGGGGGATTTTTGGGAAAAAATTTTCCCGGGGGGGGGAAA
AATTTTTGAAAAAATCTTTTTGGGGGGGGGCCCCCTCCTCTTCCCGAATA
AAACCCCCCCGGGAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_a21.g1 MSMg01no428_a21.g1 CHROMAT_FILE:
MSMg01no428_a21.g1 PHD_FILE: MSMg01no428_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:07 2005
         (217 letters)



>mm_chr8_6790444_6791059
          Length = 616

 Score =  412 bits (213), Expect = e-120
 Identities = 216/217 (99%), Gaps = 1/217 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatctctggcacatatgtttaaaaaaaattgtgtaaaagcaagtttctataacatagca 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 332 agatctctggcacatatgtttaaaaaaaa-tgtgtaaaagcaagtttctataacatagca 274

                                                                       
Query: 61  ccagagagcagagacaggaggctgcttcggcttgcagaatagtccccatagctaagacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ccagagagcagagacaggaggctgcttcggcttgcagaatagtccccatagctaagacat 214

                                                                       
Query: 121 agatattcatactgggctgggaagatgctcagaggttgaatgggttctgcacttgcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agatattcatactgggctgggaagatgctcagaggttgaatgggttctgcacttgcagag 154

                                                
Query: 181 gtcttctgttaggttcccagaagtcaggtggcttaca 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 153 gtcttctgttaggttcccagaagtcaggtggcttaca 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 616
Length adjustment: 9
Effective length of query: 208
Effective length of database: 607
Effective search space:   126256
Effective search space used:   126256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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