BAC Information

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BAC

Clone NameMSMg01-428E23
Chromosome8 (Build37)
Map Location 16,250,904 - 16,251,152
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneEG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428E23.T7 (MSMg01no428_e23.b1)MSMg01-428E23.TJ (MSMg01no428_e23.g1)
ACCAG521305AG521306
length797793
length of high quality
(start - end)
249 (75 - 323)450 (74 - 523)
definitionCHROMAT_FILE: MSMg01no428_e23.b1 PHD_FILE: MSMg01no428_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:27 2005CHROMAT_FILE: MSMg01no428_e23.g1 PHD_FILE: MSMg01no428_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATACCGCGG
AATTCAGCTGTCATTTCTTGACTCATTGTATGGCCTTAACCATGTGTAGT
TTGTTGTGTATCAAGTATTTTTAAATGTAATTGTTCTGATGGATTTTCAG
TGTAAGGTTGACTAGGAGATGAAGTATGTGAGGTTTTACTTATTTACTTT
CTATAATTTACAGTTTATATCTTGTATAGAATGAATTAGTAGTGGTATAG
ATCCTCTATGTATAGCGAGTTTTCTCACAGGAATCCTGGCTGAATCATAG
TTTTCATTTATTTATAGGATACTTACATGNTATAGATCAGCGTTTCTTGT
TTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
AACTTTTCTTTTTCCCCTTGCCTTTCTACAATAAAGCTCTAAAACCATAA
ACTGTCTCTGTTCATCAAGGGCATGGTGTTACCTTACAACAATAACAATA
GTTACTCCCAGATATTTAGGTAAGACAAATGCCGAATCAAGATAAAATTC
GTACATTAATGTATGTGCGTTTGTGCGTGTGTCCTTTTACATTTTCCTTA
TTTCCTACATCTCTTTTTTTCTTTTTTTCCTTCTTCTTTCCTTTTCCTCC
CCCCCGCTCTTTTTTTTTTTTTCTTTTTCTTTAAATTACACCCCCTTTAC
TTTCCCCTTCTTTACCCCTTTTTTTTTCTCTCTCTTTTTTTCTCTTCTTC
CTCTTCCCCCTTCCTTTCCTTTTTTCTATTTCCCCCTTTTTTTTTCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCACAGCTATAGAATCAATGGTATC
TGTGCCTAACCCGGGGCTCCAAGCTGCCAGTTGGCACTTCAAGGAAAGGA
AGGAGTGGTCCCTGGTGTTTTTTTTTTTTTTAAATATTGGTCTGTTTGAT
GGTTAACCTTGACTGTTAGCTTGACAGACTTGAAATAAGCCTGAAAACAA
ACCATCAGGTATAGGATGAATTGTGTCGAATAGGTTAATTGAGGAGGGAA
GACACCATAAATATGGGTAGCACAATTCTGTGGGTTGTGAGCCTTACTGA
GTATGGCAGGGGAAAGTTAGCTGAGCACAGCATTCATCTGTCTTTCTCTA
TTATGGACGAAATGTTACCAGCCACCTGCCTTTTCCTTCTTCCACCACAT
GCTCCCTGCCTGGAGAGTTGGTAGCACCTGGAACCATCAGCCAGAGTAAA
CCCTTTCTTCCTTAACTTAATGTGTGTCAGATATTTGGCCACAGCCATAA
AGCAAGCAGCTTATACAGTCTACCGCACAAAAACAGCTTATCTGCAGAAC
CATAGAATTTTTCCCCCCCACTTCCAGTTTTGAAGGAAAATTATATTTCC
GGNCCCTAATTACACTTTATTAAATTTAAGCGAAAATCCCCCCCCCCTCC
TTCATTATTAATTTGACCTTGGTTTTATAACATCCCCCCCCCTTTTCCTT
TTTGTTAAATTTTCTCCTTTCCACACCCTTTCTTTTCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_e23.b1 MSMg01no428_e23.b1 CHROMAT_FILE:
MSMg01no428_e23.b1 PHD_FILE: MSMg01no428_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:27 2005
         (249 letters)



>mm_chr8_16250704_16251353
          Length = 650

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtatggccttaaccatgtgtagtttgttgtgtatcaagtatttttaaatgtaattgt 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtatgaccttaaccatgtgtagtttgttgtgtatcaagtatttttaaatgtaattgt 260

                                                                       
Query: 61  tctgatggattttcagtgtaaggttgactaggagatgaagtatgtgaggttttacttatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tctgatggattttcagtgtaaggttgactaggagatgaagtatgtgagattttacttatt 320

                                                                       
Query: 121 tactttctataatttacagtttatatcttgtatagaatgaattagtagtggtatagatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactttctataatttacagtttatatcttgtatagaatgaattagtagtggtatagatcc 380

                                                                       
Query: 181 tctatgtatagcgagttttctcacaggaatcctggctgaatcatagttttcatttattta 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatgtatagcgagttttctcacaggaatcctggctgaatcatagttttcatttattta 440

                    
Query: 241 tagg-atac 248
           |||| ||||
Sbjct: 441 tagggatac 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)