Query= MSMg01no428_p12.b1 MSMg01no428_p12.b1 CHROMAT_FILE:
MSMg01no428_p12.b1 PHD_FILE: MSMg01no428_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:18 2005
(443 letters)
>mm_chr8_67515229_67516072
Length = 844
Score = 661 bits (342), Expect = 0.0
Identities = 366/378 (96%), Gaps = 10/378 (2%)
Strand = Plus / Minus
Query: 4 ggaattcctcctttc----tgttgaggtttgttttacttttggttgttgatttttttttc 59
||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggaattcctcc---caatgtgttgaggtttgttttacttttggttgttgatttttttttc 405
Query: 60 cttcc-cacagtaactgaagggctttgtgaggggcactgagaacaaagtattcctggcca 118
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cttccacacagtaactgaagggctttgtgaggggcactgagaacaaagtattcctggcca 345
Query: 119 gtactataagccatattaaagagtggccacactgggcctggtggctcaggcttgtgattc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gtactataagccatattaaagagtggccacactgggcctggtggctcaggcttgtgattc 285
Query: 179 cagacattcaggagggatcaggagggacagctagggcactttcctattctatagtataaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cagacattcaggagggatcaggagggacagctagggcactttcctattctatagtataaa 225
Query: 239 gacatggggactgtagagatggctcagtggttattgacacttgctgctcttgaatgttcc 298
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 224 gacatggggactgtagagatggctcagtggttaaagacacttgctgctcttgaatgttcc 165
Query: 299 acatgtagtagctcacagccgactttaactccagtgagcatcaagtgaacacatggcaca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 acatgtagtagctcacagccgactttaactccagtgagcatcaagtgaacacatggcaca 105
Query: 359 catgcat--atatatata 374
||||||| |||||||||
Sbjct: 104 catgcatgcatatatata 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 844
Length adjustment: 10
Effective length of query: 433
Effective length of database: 834
Effective search space: 361122
Effective search space used: 361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_p12.g1 MSMg01no428_p12.g1 CHROMAT_FILE:
MSMg01no428_p12.g1 PHD_FILE: MSMg01no428_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:18 2005
(562 letters)
>mm_chr8_67374482_67375443
Length = 962
Score = 1007 bits (521), Expect = 0.0
Identities = 553/566 (97%), Gaps = 4/566 (0%)
Strand = Plus / Plus
Query: 1 ttcagttccactccaaacttattgtctaggcaccctcgaggtagagccaggattccaggc 60
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 197 ttcagttccactccaaacttactgtctaggcaccctcggggtagagccaggattccaggc 256
Query: 61 ttgaaggaaggcaaggtctgagactctc----tactgtaactgaggcagcactagaccat 116
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 257 ttgaaggaaggcaaggtctgagactctctacttactgtaactgaggcagtactagaccat 316
Query: 117 tactggccaaatggttaccgttagttgtataagtgatacactcgcggagggaagggagca 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tactggccaaatggttaccgttagttgtataagtgatacactcgcggagggaagggagca 376
Query: 177 ggcaagtttagtctagccaaaatacaaaagaaagatggctgaactggagtcagagggatt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggcaagtttagtctagccaaaatacaaaagaaagatggctgaactggagtcagagggatt 436
Query: 237 gaaataattgttcagattctagatgataaagtgctcagtaagaattccgatggattaggc 296
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaaagaagtggtcagattctagatgataaagtgctcagtaagaattccgatggattaggc 496
Query: 297 ttcaggagaagtagcgtccggagtgaacttaaatttggaagttgacccatgtagaccgta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 497 ttcaggagaagtagcgtccggagtgaacttaaatttggaagttgacccatgtagatcgta 556
Query: 357 tgtacagtcacaagactagttgaaataagctctgtaatgtagctacagaaaagaccaaga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgtacagtcacaagactagttgaaataagctctgtaatgtagctacagaaaagaccaaga 616
Query: 417 catgatccctgggccactccagcatcacacgaacggagtgcttgcctgaggaagcacaag 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 617 catgatccctgggccactccagcatcacacgaacggagtgcttgcctgagggagcacaag 676
Query: 477 gctccatccctagcactgccaataagtacttaaataanataattgcaaaagtgttggtgt 536
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 677 gctccatccctagcactgccaataagtacttaaataaaataattgcaaaagtgttggtgt 736
Query: 537 gtgcttataatccccgcactcaggag 562
||||||||||||||||||||||||||
Sbjct: 737 gtgcttataatccccgcactcaggag 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
