BAC Information

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BAC

Clone NameMSMg01-429D13
Chromosome8 (Build37)
Map Location 129,342,441 - 129,503,659
singlet/doubletdoublet
Overlap geneTomm20, Rbm34
Upstream geneE330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
Downstream geneLOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429D13.T7 (MSMg01no429_d13.b1)MSMg01-429D13.TJ (MSMg01no429_d13.g1)
ACCAG522001AG522002
length742733
length of high quality
(start - end)
509 (61 - 569)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no429_d13.b1 PHD_FILE: MSMg01no429_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:38 2005CHROMAT_FILE: MSMg01no429_d13.g1 PHD_FILE: MSMg01no429_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(129,503,151 - 129,503,659)(129,342,441 - 129,342,685)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCGT
GTTTACGAAGTAAGAGAGTCTGACTCACGCTCAACTTGGACTTGAGAAGT
TGAACTTGGATTGCAGAAGCAAGTACTTTCTATTACAGTGCACATGAACT
CTGTGACGATAAATGTTAGCCTTGCCATTTTTATTATTGCTGCCATTATC
TGATCATATCAGATAAAATCTCAAATGCTCTATAATAAATATTATAGTTA
TTTTATGGCTTTTGGGAGGGCCTCAAGTTGTTTGGAGAGTCTAAAAATAC
TCAGATTGTATCTTTCCGTCCTTGGCAGAACATCTCAGAAAGCCAGAGTT
GTGCCAGAAGTCTCCTAAGGGCGAACAGAACGCCAGCAGTTGTGACGGTC
TCTTGGGTTTTCAGTCCCACGTGGCAGGGGGAGAACTGTATGAGCGAGTC
TCCCGTGTTCAAATCGCAGTCGTGGTTCGGTTGTCGATGTCAGACTGCAT
TTCAGTGAGCGCAGAATGGCTGAAACCAGCAGGTACATATGTCACTAAGA
ATGATTGTCGTTGACATCAAGGCGCGTTAGTTATCGCTTTGGGGGTAACT
TCTGGCAGCCAGGAAAGCGTACCCCATCACAGAGCTCTGATGTGACACCG
GGCTTTTGAGCTTACCGCTGTCCCTTACTCCATAATTCCTCGGCGAATAG
CTTTGCCCTTTGGCACTTTTGCTTCCACTGTAAAACTGCCAA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCAGGGGCTCAGAGGGGAATAAGGTAGTC
ACCAGACACAGTTCTGGTACCTTTGGAAGGTATGAGTATGTGTTCTGCAC
AGTTGAGAAACAGTGCAGGGCTATCCTGCCAAGGCTTTTCCCCTCAAGTT
TCAGTTTCTATGGTGGTCATTCAGTGCCTGGAGTAGAAGAACAAAAGGCC
TTTGATGTCATCTGACACAGTTCCTGACTATTGCAAAAACACAGGACGCT
TTCACTGTCTCTGGGAAGGTTATGCTATACTGGTAGAAATTTTGATTCAA
GGTAAAGCAGCAATAAATGAGCCCAGTGTGGGCATGATGCAGACACCATG
CTCTAGCCTCATTCCTTATTATTATCATCATCGTCGTTGTCATCATCATC
ATTATTTGCGGCTCTTTTGAGACAGAGTTTCAGGTAGCCCACGTTAGTTC
CACTGCGTAGCCAAGGATGGTAAAGGTTTTTGACTTACTCACCACATGGT
CCCAGCTACAGAAGATCATCTAGATAGGGTCTCCCTACCTTCTTTTACAC
CCCTTACAGATGATGGCTCTTACCCGCCACCCCCCCCTTGCGTTTCCTTA
CCCCTTTGCTTTTACCCCACCATGTTTAAACCACACCGTACAAACCTGTT
TTCAATATCTCTTCCCCATTCTATTTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_d13.b1 MSMg01no429_d13.b1 CHROMAT_FILE:
MSMg01no429_d13.b1 PHD_FILE: MSMg01no429_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:38 2005
         (509 letters)



>mm_chr8_129502951_129503859
          Length = 909

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagagagtctgactcacgctcaacttggacttgagaagttgaacttggattgcagaagc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 709 taagagagtctgactcacgctcaacttggacttaagaagttgaacttggattgcagaagc 650

                                                                       
Query: 61  aagtactttctattacagtgcacatgaactctgtgacgataaatgttagccttgccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aagtactttctattacagtgcacatgaactctgtgacgataaatgttagccttgccattt 590

                                                                       
Query: 121 ttattattgctgccattatctgatcatatcagataaaatctcaaatgctctataataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttattattgctgccattatctgatcatatcagataaaatctcaaatgctctataataaat 530

                                                                       
Query: 181 attatagttattttatggcttttgggagggcctcaagttgtttggagagtctaaaaatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 attatagttattttatggcttttgggagggcctcaagttgtttggagagtctaaaaatac 470

                                                                       
Query: 241 tcagattgtatctttccgtccttggcagaacatctcagaaagccagagttgtgccagaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcagattgtatctttccgtccttggcagaacatctcagaaagccagagttgtgccagaag 410

                                                                       
Query: 301 tctcctaagggcgaacagaacgccagcagttgtgacggtctcttgggttttcagtcccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tctcctaagggcgaacagaacgccagcagttgtgacggtctcttgggttttcagtcccac 350

                                                                       
Query: 361 gtggcagggggagaactgtatgagcgagtctcccgtgttcaaatcgcagtcgtggttcgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtggcagggggagaactgtatgagcgagtctcccgtgttcaaatcgcagtcgtggttcgg 290

                                                                       
Query: 421 ttgtcgatgtcagactgcatttcagtgagcgcagaatggctgaaaccagcaggtacatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttgtcgatgtcagactgcatttcagtgagcgcagaatggctgaaaccagcaggtacatat 230

                                        
Query: 481 gtcactaagaatgattgtcgttgacatca 509
           |||||||||||||||||||||||||||||
Sbjct: 229 gtcactaagaatgattgtcgttgacatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no429_d13.g1 MSMg01no429_d13.g1 CHROMAT_FILE:
MSMg01no429_d13.g1 PHD_FILE: MSMg01no429_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:38 2005
         (245 letters)



>mm_chr8_129342241_129342885
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaggggctcagaggggaataaggtagtcaccagacacagttctggtacctttggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaggggctcagaggggaataaggtagtcaccagacacagttctggtacctttggaagg 260

                                                                       
Query: 61  tatgagtatgtgttctgcacagttgagaaacagtgcagggctatcctgccaaggcttttc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgagtatatgttctgcacagttgagaaacagtgcagggctatcctgccaaggcttttc 320

                                                                       
Query: 121 ccctcaagtttcagtttctatggtggtcattcagtgcctggagtagaagaacaaaaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcaagtttcagtttctatggtggtcattcagtgcctggagtagaagaacaaaaggcc 380

                                                                       
Query: 181 tttgatgtcatctgacacagttcctgactattgcaaaaacacaggacgctttcactgtct 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tttgatgtcatctgacacagttcctgactattgcaaaaacacaggatgctttcactgtct 440

                
Query: 241 ctggg 245
           |||||
Sbjct: 441 ctggg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)