BAC Information

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BAC

Clone NameMSMg01-430A12
Chromosome8 (Build37)
Map Location 7,347,530 - 7,347,653
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430A12.T7 (MSMg01no430_a12.b1)MSMg01-430A12.TJ (MSMg01no430_a12.g1)
ACCAG522621AG522622
length771803
length of high quality
(start - end)
244 (75 - 318)124 (78 - 201)
definitionCHROMAT_FILE: MSMg01no430_a12.b1 PHD_FILE: MSMg01no430_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:41 2005CHROMAT_FILE: MSMg01no430_a12.g1 PHD_FILE: MSMg01no430_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTATTTGCCCTTAGCAAGCCTTTACAGATATATAGCAAATG
TGCAGCCTATACTTCACGTGTGCTCCCTAACCAGTGGAGCAAGGACTGTC
TTTTTCTCTGTTACCTACCATTGGATCCTCTACCCTATATATAGAGATCC
TGGTTGGGCCTCAGTGGGAGAAAAAGTGCCTGGTCATAGTGGTGAGCCCT
TCTCTGAGTAGAAACGGAAGGTGCAATTGGGGAGGAATTTGTAAGGGTGG
GACTTGGAAGAGAGGAAATAGATANTCTATGGTTGGGATATAAAGTGAAT
AAAAATAAATTATTTAATTCTACCAACACACTTCACTCTTTCTTTTTTCA
TATACTTTTAAGACTAATTTCAGGCAATTGAAGGCATCTCCTATCTCTAT
TATCTTCTCAGTTGACTCCCCATTATGGCCCCTCTATCTTTGCCCTTTAT
ACTGTGTTGCACTGCTATTTGATTATCTAGACCCCATTCTTCTTGTGCTT
TGAGTCTCTTAAGCCCCCTGTATCTCCCTCGCTCTGTTTTTTTCTTTTCC
TTTTTCTCACTCTTTCTGCATCCCTCCCTTCCCTTCTTTTTTCCTTCCCT
TTCATGCATTCCTATTTTTTTTTTTTTCCTTTTTCCCTTATGTCACTTTT
CTCCTCCTTTTTCCCTTTTCCTCTTATTTCCTTCTTTTTCTTATTTTTTT
TCCCTTTCCTTTTTTCCTATT
TCCTATCCATTGTTTAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATATCTCTAGAACTCGATATTT
AAAATATGTTATGCTTTATGCTTATAAAATGTCCTAAGTCTCAATGCTTA
TATATCATGCATTTGTGAAAACTAGAAATTATTAAACTGCTTTTTAATTG
AGAGTAGTAATAAGATACTTAAAACACATAGAATAATATGTTTGAATGCT
TTAGCCCCTACTGTGTGCTGGCTTCAAAGATGATTGTCCCCATACACTAA
TGTGCTTACTCGTCTATTTTTTTTGTAGACCACTTCAAACTATTGTATAT
TTTTATCTTCTTCATAACCTCTTATCATATATAAAGTTCATGAACTTACA
TTACTTGGCAAGTTCCGTATATTCTTATTTATCCGACTTTTTTCCGCTTA
TCCATAGTTACTTCTTTTTTTTAGCCACTCTTTCCATTTTTTCATTGCAT
CTAAATGCTATTTCTCTTCTTCTCCTTTTCCCTGCATAATTTTCTCTACT
CGATCAATATCATATATTATCCATTATTCAATTATCCATCCACCCTATTC
ACACCTCCTTTATATCTTCTCCCCTTCTTAACCTCCCTCCTATTAACCTC
TCCCTTTCCCTATCCATCCCTACCCCCGCCTATCTTTTAAATTCCTACCC
CGTCCTAATCTCCTCTCTTATATCCTCCCTTACCAATTTTATCTTCAACA
CTCCCATTACCCCATTTTAACCCCCCCTATCATGCCTATTCCCACCCCTA
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_a12.g1 MSMg01no430_a12.g1 CHROMAT_FILE:
MSMg01no430_a12.g1 PHD_FILE: MSMg01no430_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:41 2005
         (124 letters)



>mm_chr8_7347330_7347853
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatctctagaactcgatatttaaaatatgttatgctttatgcttataaaatgtcctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatatctctagaactcgatatttaaaatatgttatgctttatgcttataaaatgtcctaa 265

                                                                       
Query: 61  gtctcaatgcttatatatcatgcatttgtgaaaactagaaattattaaactgctttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtctcaatgcttatatatcatgcatttgtgaaaactagaaattattaaactgctttttaa 205

               
Query: 121 ttga 124
           ||||
Sbjct: 204 ttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)