BAC Information

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BAC

Clone NameMSMg01-430M22
Chromosome8 (Build37)
Map Location 42,585,790 - 42,750,814
singlet/doubletdoublet
Overlap geneLOC100039376, Gm1815
Upstream geneCnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
Downstream geneLOC671994, Zfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430M22.T7 (MSMg01no430_m22.b1)MSMg01-430M22.TJ (MSMg01no430_m22.g1)
ACCAG523213AG523214
length788857
length of high quality
(start - end)		444 (76 - 519)378 (76 - 453)
definitionCHROMAT_FILE: MSMg01no430_m22.b1 PHD_FILE: MSMg01no430_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:50 2005CHROMAT_FILE: MSMg01no430_m22.g1 PHD_FILE: MSMg01no430_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,750,371 - 42,750,814)(42,585,790 - 42,586,167)
sequence
GTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTCTTACTTTTTCATAAATACACTATTTTATTTTATCAGATAAA
TTCTACTCTTTGATTCCTTAAAACAAATTCTGCAATACTTTGTAGGTGAG
ATTCTACATTTGCATAATTAGTTCTTTGAAGTTGAACTGCCAGGCTGCAA
AAATCATTAAACTGATTTTCATTGAACTCTAACCGTCATGGGGAATAATA
TCTTTCTTCTTACAGAAGTATCCTTTTCCTGGAAATGTACTTCCCGGCTT
TATTTCCTTTGCTAATTGATCCTGGTCATTTAATTCAATAACTTTTATAA
AGTTAAAATTATAAAGATTTAATTGACTTTTGCTTAGCTTCCAATTATGT
TTAATTTGTTTCTATTCAATCTCATTAAATCCAATTACAGTTAGACTAAT
TGCAATTACTCCCAATAGTTCGTTTATTTTTAAAATAAGGACCCTGTCCT
CTGTTCTTTCAGGCAATTTTTCAGCAGGGTTGTGTAGGGTCTTTTAATTA
TATTAGTACAAATGGCTTCCTACATGCATCAATAAGATTTGGTTTAAAAT
TAAAAAAATTCCCTGTGACCAAGAAAAGTTAGCCAGACCCCGGTTTACAG
TTCATTACCTGGGGACGGAAGCTTCCCCCCACCCCCCCATTAAAAACACA
TTGGGGTTCTTAAAACAGCGCGTGCCCTATTTTTTTACCCCCACAACATC
AAAGTGTTCTTTTATACCTCCCGGGACAAAGGGAAAGT

NCCGATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCACCTGCCTTGGTTTGGCACAAG
GCCAACATATTGACCCTTACAGCAGACTGCAAATTCATCTTCTAAATTAT
GTATATTTTCTGACTGCTTTCTCTGTACTTGTGCCCCAAGAAAGTTAAAT
CACAAAAAACTGGTCTACAAATCCAAACATGTCACAAATACATATGGCTC
TAAGATCCAAGGAGTTTGCAGAAGAAAGTGGTTGCTACATTTGGTACCAG
CCTCACAGTTTTGAAACAATCTACTCCATCCAACTTACCTAACTTAGTAG
GTAAGAGGAAAACTATAAGTATCTTTCTTGAAAAACACTATAATCCGTTC
TTTGGTGCATATGGTTTTATGTCTGTGGAAAGTGCATGGCTTATTGCTGT
TCCTCCTTTCCAAAGCAGGGGGCATTATACCTTACATTTGCTTTGAACAC
AATTTATGCCTGCATTGGTAAAAAGATTTCAATCAATTTCCCCCATTCTA
TTCTTTTTCCTTTCAAAATTCCATCTGGTTATTATTCTCCATTTAAAATA
AATTTTGGTTTTGACCCCTTGCTACCCCGTAAAATATACCCCCCACTTCT
ACTCTTTTATTATATTTTACGTACATATTTATATTAATTTACTCCCTTTT
GCTCCTACCATTTTTATATATGATATGCCTCGTCAGCCTCTTCTACCCTA
ATAATGTGATCCCCCTTCCAAACATAACCTCCCACTCCCACGCGAATCTC
TCTCTATTTTATATTCTCCTCTATTCCATCAGCCATATATCCCCCATTTC
TTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_m22.b1 MSMg01no430_m22.b1 CHROMAT_FILE:
MSMg01no430_m22.b1 PHD_FILE: MSMg01no430_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:50 2005
         (444 letters)



>mm_chr8_42750171_42751014
          Length = 844

 Score =  859 bits (444), Expect = 0.0
 Identities = 444/444 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acactattttattttatcagataaattctactctttgattccttaaaacaaattctgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 acactattttattttatcagataaattctactctttgattccttaaaacaaattctgcaa 585

                                                                       
Query: 61  tactttgtaggtgagattctacatttgcataattagttctttgaagttgaactgccaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tactttgtaggtgagattctacatttgcataattagttctttgaagttgaactgccaggc 525

                                                                       
Query: 121 tgcaaaaatcattaaactgattttcattgaactctaaccgtcatggggaataatatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgcaaaaatcattaaactgattttcattgaactctaaccgtcatggggaataatatcttt 465

                                                                       
Query: 181 cttcttacagaagtatccttttcctggaaatgtacttcccggctttatttcctttgctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttcttacagaagtatccttttcctggaaatgtacttcccggctttatttcctttgctaa 405

                                                                       
Query: 241 ttgatcctggtcatttaattcaataacttttataaagttaaaattataaagatttaattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttgatcctggtcatttaattcaataacttttataaagttaaaattataaagatttaattg 345

                                                                       
Query: 301 acttttgcttagcttccaattatgtttaatttgtttctattcaatctcattaaatccaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acttttgcttagcttccaattatgtttaatttgtttctattcaatctcattaaatccaat 285

                                                                       
Query: 361 tacagttagactaattgcaattactcccaatagttcgtttatttttaaaataaggaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tacagttagactaattgcaattactcccaatagttcgtttatttttaaaataaggaccct 225

                                   
Query: 421 gtcctctgttctttcaggcaattt 444
           ||||||||||||||||||||||||
Sbjct: 224 gtcctctgttctttcaggcaattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no430_m22.g1 MSMg01no430_m22.g1 CHROMAT_FILE:
MSMg01no430_m22.g1 PHD_FILE: MSMg01no430_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:50 2005
         (378 letters)



>mm_chr8_42585590_42586367
          Length = 778

 Score =  731 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccacctgccttggtttggcacaaggccaacatattgacccttacagcagactgcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccacctgccttggtttggcacaaggccaacatattgacccttacagcagactgcaaatt 260

                                                                       
Query: 61  catcttctaaattatgtatattttctgactgctttctctgtacttgtgccccaagaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcttctaaattatgtatattttctgactgctttctctgtacttgtgccccaagaaagt 320

                                                                       
Query: 121 taaatcacaaaaaactggtctacaaatccaaacatgtcacaaatacatatggctctaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatcacaaaaaactggtctacaaatccaaacatgtcacaaatacatatggctctaaga 380

                                                                       
Query: 181 tccaaggagtttgcagaagaaagtggttgctacatttggtaccagcctcacagttttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaaggagtttgcagaagaaagtggttgctacatttggtaccagcctcacagttttgaa 440

                                                                       
Query: 241 acaatctactccatccaacttacctaacttagtaggtaagaggaaaactataagtatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaatctactccatccaacttacctaacttagtaggtaagaggaaaactataagtatctt 500

                                                                       
Query: 301 tcttgaaaaacactataatccgttctttggtgcatatggttttatgtctgtggaaagtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttgaaaaacactataatccgttctttggtgcatatggttttatgtctgtggaaagtgc 560

                             
Query: 361 atggcttattgctgttcc 378
           ||||||||||||||||||
Sbjct: 561 atggcttattgctgttcc 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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