BAC Information

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BAC

Clone NameMSMg01-432M09
Chromosome8 (Build37)
Map Location 37,347,250 - 37,513,634
singlet/doubletdoublet
Overlap geneEG544878
Upstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1
Downstream gene6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432M09.T7 (MSMg01no432_m09.b1)MSMg01-432M09.TJ (MSMg01no432_m09.g1)
ACCAG524712AG524713
length857786
length of high quality
(start - end)		219 (62 - 280)370 (68 - 437)
definitionCHROMAT_FILE: MSMg01no432_m09.b1 PHD_FILE: MSMg01no432_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:38 2005CHROMAT_FILE: MSMg01no432_m09.g1 PHD_FILE: MSMg01no432_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(37,347,250 - 37,347,468)(37,513,265 - 37,513,634)
sequence
TTGCGGCCGCTAAACGACTCCTACATCAAGAGAATCCGCGGAATTCTCCA
AAGGTACCAAGCTCGGGGGTAACACATTAAGTGTAGAACAGACATTAACC
CCACAGAGAGCCCGGTCTCTCATCCCCATCAGGAGTGTAGGGACTGAAGG
TTTGGGGCCTTAATTATTTATGGAAGGCTAAACTCACTGGGACACCTAGG
AGAGCAACTAACAAATCAGCTTCCTTCTGAAGGCTGAGGACTGAGGTGGA
TGTCTTTGTGTTTGGGATGTTTGGGGAAGGNCGANGGNATGTTGNTGGTG
NGGGGGAGTTTTTTTTTTTTTGGGAGGGGGGCCGGGGCCGTGCGACTTAA
CTTTTTATTGATGCCGCTGCTGATCGCTGTTGCCGACCCGTGTCCTCTGT
CCGCGGGTCTCCCCCCCCTCCTGGATTCGCGTCTTCTCGGGTTTGTGTTT
TCGTTGTTGTTGCCTTTTCTTCTCCTTACCGTTCTGCGTCGTTGATTTTA
TGCGCCCTCGATTGTGTCTTTCTTTTTGTGCTTTGTTCTCTACTTTGGCC
CGCTACAGTTCTCCGCACTTATCTTTTCTGTTTTCTCTTCCCGCGCTTTG
CGGCGTCTTCTTTATCGCTGTTCCCTATCTTACTTCCCTGGTGCTTGTTT
TTCGTATATTCTCCTTTGCTGCCCGCCGCTCGTACGTTCTTTTACCCCAG
TTTATCAGTATTTCTGGTTTTTTTCACCTGCGTTCTCTGTTCATTTCCCT
TCTTTTTTTTCTCTTTCCATTTGCTCTATTTTTTCCTTTGTTTTTCTTTC
TCCTCCTTTATATCCGCCGCGTCTTCTCCCCATGTCCTTTTTTTTATTTC
TTCACTT

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGGTACGGAAAGAAACCTTTGGTGGTTTAAATG
GATAATCTGAAGGAAATGTGGTATCCAGAAAAAAACCTACCCTCATATAC
AGAACCTGGTAGACCAAGTCTAGTTGACCTCTAATCATAAATGTTATCTC
CTTTAGGCCCAGCATTGCAGTTAGGAGGAGGATCACGGGTGATCTCAGAC
AGCCCCTCTGAATTCTTTTAGCACTAGTGGATAACTTAGTTTTCTAGGGA
GTTTGGTGTTTTCTCTCCTGCTGGGTAGCAGAAGGTTTTCTTTCTTCCTG
TTCCTCAGGCTCTGGGGTGGCAGGGTCTCGCTGCTCTGTATCTGAACTGC
CACCGCTACGCTGTGTCTACCACAACACTCTTATCGCAAAGACCTATTCA
CAACCATGCTCAAGGCTGGTTACACACACCCCACGTTGGATTATAAACAC
TGGGTATTTGTCTGCTTATTACATGGGGATGTATCTGTCTATGCCCTCTC
CTTCTTTTCTCTTATCCCTCTTTTCCTGCGTTTTCTTCCTGGCCCTCTTA
TGTTCGCTATCTTCTTGCCCCTTTCATCTCCTTGCCCTCTTATTTACGCT
CTTCGCTTTTTATTTTTTTCTTTTATTTGTAATCTTCTTCTCGTTTTCCT
CTTTGTCCTTGTCTTTTTTTCTCTTTTCCATGTATTTTTTTCTCTTTAGT
TGTCTGTTTACTTCGTCTTTATCATCCCCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_m09.b1 MSMg01no432_m09.b1 CHROMAT_FILE:
MSMg01no432_m09.b1 PHD_FILE: MSMg01no432_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:38 2005
         (219 letters)



>mm_chr8_37347050_37347668
          Length = 619

 Score =  424 bits (219), Expect = e-123
 Identities = 219/219 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcgggggtaacacattaagtgtagaacagacattaaccccacagagagcccggtctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgggggtaacacattaagtgtagaacagacattaaccccacagagagcccggtctctc 260

                                                                       
Query: 61  atccccatcaggagtgtagggactgaaggtttggggccttaattatttatggaaggctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccccatcaggagtgtagggactgaaggtttggggccttaattatttatggaaggctaa 320

                                                                       
Query: 121 actcactgggacacctaggagagcaactaacaaatcagcttccttctgaaggctgaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcactgggacacctaggagagcaactaacaaatcagcttccttctgaaggctgaggac 380

                                                  
Query: 181 tgaggtggatgtctttgtgtttgggatgtttggggaagg 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggtggatgtctttgtgtttgggatgtttggggaagg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no432_m09.g1 MSMg01no432_m09.g1 CHROMAT_FILE:
MSMg01no432_m09.g1 PHD_FILE: MSMg01no432_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:38 2005
         (370 letters)



>mm_chr8_37513065_37513834
          Length = 770

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtacggaaagaaacctttggtggtttaaatggataatctgaaggaaatgtggtatcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tggtacggaaagaaacctttggtggtttaaatggataatctgaaggaaatgtggtatcca 511

                                                                       
Query: 61  gaaaaaaacctaccctcatatacagaacctggtagaccaagtctagttgacctctaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaaaaaaacctaccctcatatacagaacctggtagaccaagtctagttgacctctaatca 451

                                                                       
Query: 121 taaatgttatctcctttaggcccagcattgcagttaggaggaggatcacgggtgatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taaatgttatctcctttaggcccagcattgcagttaggaggaggatcacgggtgatctca 391

                                                                       
Query: 181 gacagcccctctgaattcttttagcactagtggataacttagttttctagggagtttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gacagcccctctgaattcttttagcactagtggataacttagttttctagggagtttggt 331

                                                                       
Query: 241 gttttctctcctgctgggtagcagaaggttttctttcttcctgttcctcaggctctgggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gttttctctcctgctgggtagcagaaggttttctttcttcctgttcctcaggctctgggg 271

                                                                       
Query: 301 tggcagggtctcgctgctctgtatctgaactgccaccgctacgctgtgtctaccacaaca 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 270 tggcagggtctcgctgctctgtatctgaactgccactgctacgctgtgtctaccacaaca 211

                     
Query: 361 ctcttatcgc 370
            |||||||||
Sbjct: 210 ttcttatcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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