BAC Information

Click to search

BAC

Clone NameMSMg01-433C05
Chromosome8 (Build37)
Map Location 42,142,886 - 42,325,707
singlet/doubletdoublet
Overlap geneMtus1, Fgl1, Pcm1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl
Downstream geneAsah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C05.T7 (MSMg01no433_c05.b1)MSMg01-433C05.TJ (MSMg01no433_c05.g1)
ACCAG524990AG524991
length714811
length of high quality
(start - end)		503 (65 - 567)175 (64 - 238)
definitionCHROMAT_FILE: MSMg01no433_c05.b1 PHD_FILE: MSMg01no433_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:08 2005CHROMAT_FILE: MSMg01no433_c05.g1 PHD_FILE: MSMg01no433_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,142,886 - 42,143,388)(42,325,533 - 42,325,707)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCATTGCGTTTCACAACGTGGGTGCTCTGGCTTCCTCTCGCTTCCCTTT
CATTAGGCAATCTTCAAATCACTGGGACCATGCCTGTATCATCTCCGGAT
ATCCTGGCACCGAGTGGCCCTATGCGAGCTATGCTGGTAGCATCACTGCC
CTAGAGTGCATCAAGGGTTGGAAAGACCTTTGACAAAAATGATGCTGTCA
CATTTTACCAATGGCAGACAAATAAGGTGACGGTGGCAAAATGTTACGTT
CACTGGTTTGTCCCCAGCACATGACAGAACACTTACCTAGCATGCACGAG
GCCCTGGGTTCAAGGCCCGGTACCTTGAAAAAAAAAAATCCATTAAATCT
AAGCTAAGCTGTTCAGAATTCTGGCTTCTTCTCAAGCCACCCCTGCCAGG
TCAGGCTTCCCCCTTGCTGGTCTGGCTTTTGCTCATACCTCCTACTGGCT
TCCTGAGCTTGATTGATCTGGGTGGAGACTCCGAGAGCAGAGGCATTCCC
AATCCAACTCTGTTCCTTGGACTTTACAAAGCAAGGAGCTGCCACAGGTG
TCTGCTGAAATCAGTGTCCTTCCCCTGCCATGAGTAAATGACCCCATTTT
GTAAAACATTCTCTCTCTCCCCTTATACCAAGACTTTTTATCGCCCCTTT
TACAAGGATTTTTT

TGTGCGAGGCCTGGCGGCCGCCTGTTCGACAAATGTGTAGGTGACCTATA
GAATGACTAGAGGAATTCGGCGGGTGGGCTGGGAGGGATGGCGGTCCCCG
GGGCCTCGGGCCGCCAAGGCCAGTTTCTTTCGGAACTCATCACCCCGAAC
TACAAGGCAACCTTCCCCTCCACCCTGGAGGGGGGTGAAATCTCCAGCAC
CGGGCGAGCGGTCCTCACATGGGACGCCCCAAGATCGTGTATGTGCCAGC
CAGCGTCGTCCCAGACGCTCGCCAGAGCTAGCGTGTCAGTCGGCGCCGAG
AGGATTTTTTTTTTCNCTGGGGGCAGCCCAAGTACCGCGTATTCATGCCA
TCTCCCATCTCCCACGCTTCTTGGTAGTCTTTCTTCCCGCCCTCCTCGTC
TTTGCTTGCTCTCCCCCCAACCTTTTGTCCTTGCCCCCTTGTTTGCCCTA
ACTCCTTCGTTTACCTTCTCCAAATTTTTTCCGATCTTATCACGCTTCTT
ACCCTCCTCTGCCTTCTTTATTCCCCTCCTTATCTTTTCGATCTTTCTTT
GCTTCTCCTTTTCCCCTTTTCCTCCTTTTTTTTTTCTTCTCTTCTCCTTT
CCCTATTTCACTTCCCTTCCTCTTTTATTTTTTTATCCCTACTCTTCCTA
CACTCCTTCTTACTCTTCCTCCTTCTCCTCTCCCCTTCTCCCCTTTTTCC
TCCTTCTTCTCTCACAACTGTTACCCCAAATCCCCGTTTCATTATCTTAT
CACACCTAATATCTCCCTCCATCTCCCCATTTATCCCCCTCCTTTATCCC
CTCTCCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c05.b1 MSMg01no433_c05.b1 CHROMAT_FILE:
MSMg01no433_c05.b1 PHD_FILE: MSMg01no433_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:08 2005
         (503 letters)



>mm_chr8_42142686_42143588
          Length = 903

 Score =  973 bits (503), Expect = 0.0
 Identities = 503/503 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacgtgggtgctctggcttcctctcgcttccctttcattaggcaatcttcaaatcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacgtgggtgctctggcttcctctcgcttccctttcattaggcaatcttcaaatcactg 260

                                                                       
Query: 61  ggaccatgcctgtatcatctccggatatcctggcaccgagtggccctatgcgagctatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaccatgcctgtatcatctccggatatcctggcaccgagtggccctatgcgagctatgc 320

                                                                       
Query: 121 tggtagcatcactgccctagagtgcatcaagggttggaaagacctttgacaaaaatgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtagcatcactgccctagagtgcatcaagggttggaaagacctttgacaaaaatgatg 380

                                                                       
Query: 181 ctgtcacattttaccaatggcagacaaataaggtgacggtggcaaaatgttacgttcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcacattttaccaatggcagacaaataaggtgacggtggcaaaatgttacgttcact 440

                                                                       
Query: 241 ggtttgtccccagcacatgacagaacacttacctagcatgcacgaggccctgggttcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttgtccccagcacatgacagaacacttacctagcatgcacgaggccctgggttcaag 500

                                                                       
Query: 301 gcccggtaccttgaaaaaaaaaaatccattaaatctaagctaagctgttcagaattctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccggtaccttgaaaaaaaaaaatccattaaatctaagctaagctgttcagaattctgg 560

                                                                       
Query: 361 cttcttctcaagccacccctgccaggtcaggcttcccccttgctggtctggcttttgctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcttctcaagccacccctgccaggtcaggcttcccccttgctggtctggcttttgctc 620

                                                                       
Query: 421 atacctcctactggcttcctgagcttgattgatctgggtggagactccgagagcagaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacctcctactggcttcctgagcttgattgatctgggtggagactccgagagcagaggc 680

                                  
Query: 481 attcccaatccaactctgttcct 503
           |||||||||||||||||||||||
Sbjct: 681 attcccaatccaactctgttcct 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_c05.g1 MSMg01no433_c05.g1 CHROMAT_FILE:
MSMg01no433_c05.g1 PHD_FILE: MSMg01no433_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:08 2005
         (175 letters)



>mm_chr8_42325333_42325907
          Length = 575

 Score =  339 bits (175), Expect = 8e-98
 Identities = 175/175 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcggcgggtgggctgggagggatggcggtccccggggcctcgggccgccaaggccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aattcggcgggtgggctgggagggatggcggtccccggggcctcgggccgccaaggccag 316

                                                                       
Query: 61  tttctttcggaactcatcaccccgaactacaaggcaaccttcccctccaccctggagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tttctttcggaactcatcaccccgaactacaaggcaaccttcccctccaccctggagggg 256

                                                                  
Query: 121 ggtgaaatctccagcaccgggcgagcggtcctcacatgggacgccccaagatcgt 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtgaaatctccagcaccgggcgagcggtcctcacatgggacgccccaagatcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |