BAC Information

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BAC

Clone NameMSMg01-433G11
Chromosome8 (Build37)
Map Location 58,156,926 - 58,157,375
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G11.T7 (MSMg01no433_g11.b1)MSMg01-433G11.TJ (MSMg01no433_g11.g1)
ACCAG525194AG525195
length732740
length of high quality
(start - end)
536 (63 - 598)470 (67 - 536)
definitionCHROMAT_FILE: MSMg01no433_g11.b1 PHD_FILE: MSMg01no433_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:29 2005CHROMAT_FILE: MSMg01no433_g11.g1 PHD_FILE: MSMg01no433_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGT
TTTTCCCTCATGTCCCCATCCTCTACTGAATCATGTTTACTTTTAATTAC
CTGACATTCTTTTCTATTCGCCTGATACTTCAATACCTGATCCTTGCCCT
CCCCCTTTTCAGTCCAATATCTCTCTCCCACCCAGATAACTCCCTCCCTC
TCTCTATTTCCTCTATTTTCCCCCATATTATATAGGATTGAAGCAACCAC
ACTTTTGTTGTTCTTCTTCTTAAGCTTCATATGGTTTGTAGGCTGTATCA
TGTTTATTCTGAGATTTGGGGGTAATATCTACATATCAATTAGAACATAA
TATATGTGTTCTTTTGTTTCTGAGTTACATCATTCTTCACAATAAAAGAG
CTTTTGAGTAAACCACTATCCCTCACCTCAAGCTATATTATGGTGCAATA
ATTACAAAAACCACATGATATTGGTATAGAGACAGGCAGGTAACTCAACG
GAATAGAATTAAAGATGACAAATACAACCACAGACCTATGGTCACTTGAT
CTTTGAAAAAGAAGCCAAAATGATCCAATAGAAAAAAAGACAGCACCTTT
CACAAATGGTGCTGGTTCAATTGAGATTTTTTCTTGTAGCCAAAGGAGGA
TCACACAGGTGCATAGAATAAGGTGCACAGCCCCCACTTTGCAATTCAGG
GTTGGTGGAAGGGATCCTTTTGTCTCTGTGTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGTATCATCCCTTACCATAGGACACAATTTGCT
AGCTCAGTGACTAAAAAGGAAACAAATAACAACAACAACTAGCTTACTCC
AGTGGCAAATTATAAATGCTAACATTGATCAAAATGGAAGTTTCTGTTAA
CCCTTGTCCAACTCATTGTTTAATATATTCATAATATATTCCAATCTTGA
AACTAATTATTTATAACTATTATTAAACATTTTAAAGAAACTAAAGCTTT
TATAGAGCCCTCTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCACTCTGTCCGTGTGTCTCCTATAATTTT
GAGAGTGTATTTTAGTTTCAAAAATACTCCTTTCTCTTTATCTCCCTCCA
AACTCTCCCATACATCCCTTTCCAGTCTCCTTCAAATTCATGGCCTCCAT
TTGTTTCAATCTTTATTGCATGTATATATGCATTTGTGTATACACGTGTA
AACACCTGTGTATCATATACATACCTGTGCATACTCTAAGTATTAACTGT
TTGAGCTCACAAAAGCGTCTACTCTTGTGTGTGCTTCCCTTGTTCCTCTT
CCTCTCTTGTTACAACCTATGACTTGCCCCTTCCTCTCCAAAACATATTC
TTCCTCCATCCCCCTTTTCTCCCCTTTTCCCCTCACATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g11.g1 MSMg01no433_g11.g1 CHROMAT_FILE:
MSMg01no433_g11.g1 PHD_FILE: MSMg01no433_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:29 2005
         (470 letters)



>mm_chr8_58156926_58157795
          Length = 870

 Score =  789 bits (408), Expect = 0.0
 Identities = 444/466 (95%), Gaps = 16/466 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtatcatcccttaccataggacacaatttgctagctcagtgactaaaaaggaaacaaa 60
           |||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 450 ttgtatcatcccttaccaaaagacacaatttgctagctcagtgacaaaaaaggaaacaaa 391

                                                                       
Query: 61  taacaacaacaactagcttactccagtggcaaattataaatgctaacattgatcaaaatg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 taacaacaacaactagcttgctccagtggcaaattataaatgctaacattgatcaaaatg 331

                                                                       
Query: 121 gaagtttctgttaacccttgtccaactcattgtttaatatattcataatatattccaatc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 330 gaagtttctgttaacccttgtccaaatcattgtttaatatattcataatatattccaatc 271

                                                                       
Query: 181 ttgaaactaattatttataactattattaaacattttaaagaaactaaagcttttataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttgaaactaattatttataactattattaaacattttaaagaaactaaagcttttataga 211

                                                                       
Query: 241 gccctctaattctctctctctctctctctctctctctctctctctctctctctctctctc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 210 gccctctaattctctctctctctctctctctctctctctctctctctctct--------- 160

                                                                       
Query: 301 tctctcactctgtccgtgtgtctcctataattttgagagtgtattttagtttcaaaaata 360
                  |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 -------ctctgtccatgtgtctcctataattttgagagtgtattttagtttcaaaaata 107

                                                                       
Query: 361 ctcctttctctttatctccctccaaactctcccatacatccctttccagtctccttcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ctcctttctctttatctccctccaaactctcccatacatccctttccagtctccttcaaa 47

                                                         
Query: 421 ttcatggcctccatttgtttcaatctttattgcatgtatatatgca 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  ttcatggcctccatttgtttcaatctttattgcatgtatatatgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)