Query= MSMg01no433_k19.b1 MSMg01no433_k19.b1 CHROMAT_FILE:
MSMg01no433_k19.b1 PHD_FILE: MSMg01no433_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:50 2005
(462 letters)
>mm_chr8_116873533_116874396
Length = 864
Score = 806 bits (417), Expect = 0.0
Identities = 452/469 (96%), Gaps = 10/469 (2%)
Strand = Plus / Plus
Query: 4 ggaattcattcagcttctcacctgatccatggatagagcccctcttcaattaacctcccc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattcattcagcttcccacctgatccatggatagagcccctcttcaattaacctcccc 255
Query: 64 catcctgtatactctggcaccccagagatgtcccccacccccaaagaccatgtgcagtta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 catcctgtatactctggcaccccagagatgtcccccacccccaaagaccatgtgcagtta 315
Query: 124 gggcaggattacatgcagatgctgagaagggcatctggaatctcaggtggtggcccaaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gggcaggattacatgcagatgctgagaagggcatctggaatctcaggtggtggcccaaag 375
Query: 184 cccccccttctctgagcgaatgatggtctcttgca--------caagcaattcaatgaag 235
|||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 376 cccccccttctctgagggaatgatggtctcttgcaagcaggcacaagcaattcaatgaag 435
Query: 236 gcagcgcctgctttgctcagaggccagtattctacagtaggggtgggggtgaagacctga 295
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 436 gcagcgcctgctttgctcagaggccagtattctacaataggggtgggggtgaagacctga 495
Query: 296 cctctacaaaatagaggtggtgaaagaaaatgggaaggttggataagaatggagtatgac 355
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 496 cctctacaaaatagaggtggtgaaagaaaatggcaaggctggataagaatggagtatgac 555
Query: 356 aaaatagatgtagaaaatatcagaataaaagaagttctttgtgtgtgaaagatagtcaaa 415
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 556 aaaatcgatgtagaaaatatcagaataaaagcagttctttgtgtgtgaaagatagtcaaa 615
Query: 416 aactgaaaatacatcttataaagaagtgatttt--aaaaaaaaaatatt 462
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 616 aactgaaaatacatcttataaagaagtgatttttaaaaaaaaaaatatt 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space: 386008
Effective search space used: 386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_k19.g1 MSMg01no433_k19.g1 CHROMAT_FILE:
MSMg01no433_k19.g1 PHD_FILE: MSMg01no433_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:50 2005
(286 letters)
>mm_chr8_117054214_117054898
Length = 685
Score = 524 bits (271), Expect = e-153
Identities = 280/283 (98%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 attaggacacatagtagggctgtgtcccctatcctttcgaagtcaatctgtccacaggtt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 451 attaggacacatagtagggctgtgtcccctatcctttcgaagtcaatctgtccacagg-t 393
Query: 61 ttttttcttcacctaagaactgttgtagaaacaaaattaactggccttccatggtctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttttttcttcacctaagaactgttgtagaaacaaaattaactggccttccatggtctctt 333
Query: 121 cctagtgctacagagctaactgaggctgtgtcagagattaatttgagagtccgtctggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cctagtgctacagagctaactgaggctgtgtcagagattaatttgagagtccgtctggag 273
Query: 181 ccctggcagacttaaagatcaaaagacccctgcctgccttctgctcgaatatcctgttga 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccctgacagacttaaagatcaaaagacccctgcctgccttctgctcgaatatcctgttga 213
Query: 241 gaaacaaggcactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 283
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 212 gaaacaaggcactgtgtgtgtgtgtatgtgtgtgtgtgtgtgt 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space: 187252
Effective search space used: 187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
