BAC Information

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BAC

Clone NameMSMg01-434F08
Chromosome8 (Build37)
Map Location 55,722,188 - 55,867,968
singlet/doubletdoublet
Overlap geneWdr17
Upstream geneNeil3, LOC100040107, Vegfc, Spcs3, Asb5, Spata4
Downstream geneGpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434F08.T7 (MSMg01no434_f08.b1)MSMg01-434F08.TJ (MSMg01no434_f08.g1)
ACCAG525903AG525904
length757743
length of high quality
(start - end)		279 (37 - 315)445 (67 - 511)
definitionCHROMAT_FILE: MSMg01no434_f08.b1 PHD_FILE: MSMg01no434_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:43 2005CHROMAT_FILE: MSMg01no434_f08.g1 PHD_FILE: MSMg01no434_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,867,694 - 55,867,968)(55,722,188 - 55,722,628)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
TGTATACCAGACTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCT
GAGTGCTGGGATTAGAGGTGTGTGCCACCACGCCTGGCGGGAACTCTTAT
ACACATGCACTCACACATATTTAAGTAAAGCAGTGACTAACACACTTAGG
GAAAAAAAATTTAAATATTTTGTCCTATCTCTTTCCTGGACTCTGAAATT
CCACAGTTGGAGAAACAGGAATAGTAGTTAATGTTAACCTTGAAGCTAAA
ATATTTATATGCTCTGATAATACTTGGCCCCTGCATTTTTCAATGTAGAT
TATTTTCTCTAACATTTTTTTTTCAGAAAAGTTTAAGGCAAAATGGAAGT
GTTGGTAGCCAAACCAAGGAAGAAGACCTCTTATCTGAATTTCCCTAGCT
TGAACAGAACTTATTTTGTTTTGTGAGAATTGGCCACGTGCGTCATATAT
GTGATGACTATAAATTATTCAGATGATTGGATTGACATATATGCTTCCCC
TTCCACAGAGGAAGAGTAAGAAGTTCCCTACCTCCTCTGACGATTATGTT
TATCCCCTTCAGTCCCATTGTCTTTCCTTATTTTTTTTTCCTCGTTTCTT
TGGTTTTCTAAAAATATAGCCTCTATAAGTATTATTCCTCGTTCCCTTTG
ACTTTTCCCCCCCTAAACACCGACCACCCCCTCTTTCTTTTTTCTTTTTT
CCTCCAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTACCTCAGCATCCCATGCTGAGCTTGTAAAC
ATGAGCTGCCACTCTAGTCTGTTAGCCATTTATTATTAATACTAACTTTT
TTGCTTATTGAGACTAGATTTCTCTCTGTAGCCTTGGGTGTCCTCAAACT
CACTCTATAGACCAGGCCAGTCTCAAACTCAGAGCTCCTGCCTCTGATGG
TCTGCAATTAAAGGTGTGTGCCACCACCACCCAGCTTATTAATACTAAGT
TAAGAGAGCATTTTTCTCTCACTTGTCATCAGTGAGGTCACACAAACTGG
ACAGATTCAACATTATTTTAATGGTAATGATACAGGCTACTGTTGAAGTA
CAGTTTGTTGACTGTACAGAAACAAACTTTCTTTAATATCTGGTGGTAAT
GCTTATTGCTTAGGTTGCACTATGTAGCAGCAGCAACTTCTTTACCAGTT
GGGTAGGAATAAGAAAGCCTTTCATTCGTCTCAAAGTCTCCTATCTTCTG
TAAAAGATACTCAGGAAAATGGTTTTCCCTAGAAAATAGCATCCACAATC
CAAGGTTGCCCACCCTACCTTTATCAAGGTAATGGGCTTAAACATAAATT
TCCGAAAAATTTTGTGGGTTCTTTTTTCCTCACCCCACCTGTCCTATGTG
GGGGTCTTTGCATTCCAAAAACTGTACATATAGACTACCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_f08.b1 MSMg01no434_f08.b1 CHROMAT_FILE:
MSMg01no434_f08.b1 PHD_FILE: MSMg01no434_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:43 2005
         (279 letters)



>mm_chr8_55867385_55868063
          Length = 679

 Score =  509 bits (263), Expect = e-148
 Identities = 272/275 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtataccagactggccttgaactcagaaatctgcctgcctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattcactttgtagaccagactggccttgaactcagaaatctgcctgcctctgcctcc 525

                                                                       
Query: 64  tgagtgctgggattagaggtgtgtgccaccacgcctggcgggaactcttatacacatgca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgagtgctgggattagaggtgtgtgccaccacgcctggcgggaactcttatacacatgca 465

                                                                       
Query: 124 ctcacacatatttaagtaaagcagtgactaacacacttagggaaaaaaaatttaaatatt 183
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 464 ctcacacatatttaagtaaagcagtgactaacacacttaggggaaaaaaatttaaatatt 405

                                                                       
Query: 184 ttgtcctatctctttcctggactctgaaattccacagttggagaaacaggaatagtagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 404 ttgtcctatctctttcctggactctgaaattccacagttggagaaacaggaatggtagtt 345

                                              
Query: 244 aatgttaaccttgaagctaaaatatttatatgctc 278
           |||||||||||||||||||||||||||||||||||
Sbjct: 344 aatgttaaccttgaagctaaaatatttatatgctc 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no434_f08.g1 MSMg01no434_f08.g1 CHROMAT_FILE:
MSMg01no434_f08.g1 PHD_FILE: MSMg01no434_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:43 2005
         (445 letters)



>mm_chr8_55721988_55722832
          Length = 845

 Score =  814 bits (421), Expect = 0.0
 Identities = 436/441 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttacctcagcatcccatgctgagcttgtaaacatgagctgccactctagtctgttagc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttacctcagcatcctatgctgagcttgtaaacatgagctgccactctagtctgttagc 260

                                                                       
Query: 61  catttattattaatactaacttttttgcttattgagactagatttctctctgtagccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttattattaatactaacttttttgcttattgagactagatttctctctgtagccttg 320

                                                                       
Query: 121 ggtgtcctcaaactcactctatagaccaggccagtctcaaactcagagctcctgcctctg 180
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gatgtcctcaaactcactctatagaccaggccagtctcgaactcagagctcctgcctctg 380

                                                                       
Query: 181 atggtctgcaattaaaggtgtgtgccaccaccacccagcttattaatactaagttaagag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 atggtctgcaattaaaggtgtgtgccaccaccacccagcttattaatactaatttaagag 440

                                                                       
Query: 241 agcatttttctctcacttgtcatcagtgaggtcacacaaactggacagattcaacattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatttttctctcacttgtcatcagtgaggtcacacaaactggacagattcaacattat 500

                                                                       
Query: 301 tttaatggtaatgatacaggctactgttgaagtacagtttgttgactgtacagaaacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaatggtaatgatacaggctactgttgaagtacagtttgttgactgtacagaaacaaa 560

                                                                       
Query: 361 ctttctttaatatctggtggtaatgcttattgcttaggttgcactatgtagcagcagcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttctttaatatctggtggtaatgcttattgcttaggttgcactatgtagcagcagcaa 620

                                
Query: 421 cttctttaccagttgggtagg 441
           |||||||||||||||| ||||
Sbjct: 621 cttctttaccagttggttagg 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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