BAC Information

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BAC

Clone NameMSMg01-435B10
Chromosome8 (Build37)
Map Location 24,380,644 - 24,380,773
singlet/doubletsinglet
Overlap genenone
Upstream geneTpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7
Downstream geneSfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B10.T7 (MSMg01no435_b10.b1)MSMg01-435B10.TJ (MSMg01no435_b10.g1)
ACCAG526474AG526475
length772817
length of high quality
(start - end)
224 (73 - 296)134 (78 - 211)
definitionCHROMAT_FILE: MSMg01no435_b10.b1 PHD_FILE: MSMg01no435_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:41 2005CHROMAT_FILE: MSMg01no435_b10.g1 PHD_FILE: MSMg01no435_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCAGAGGATCC
GCGGAATTCTCACCTTTCCAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAA
GATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGCCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTATTGTAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTCCATAGTAGCATTATCCATAATATCCAGAAGCTGGATAGAACCCA
GATGTCCCTCACTATAGGAATGCTTACCGAATATGTGTTACATCTATCTT
ATGGAGTACCATTCAGCCATCACAAATAATGATTTTATGATATTTCTATT
CTTATGTTTGTTCCTGGTTGTCCTCTCTTCGACCCCCCCATTTTTTTCTC
TTATTTTTCCGCCTCCCACCCCTTCTCTCCCTATTTTTCCCCTTCCCTTT
TACCCATCTTTTTTCCCCCTCCCTTCCTTTTTCCCCTTTATTTCCCTTCT
TCTTCCCTCCTTCCCCCACTTTTTCTTTTTTTTACCCCCCCTTTTTCTTA
TCTCTTTTACCCCCCTCCTCCC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTGAGGAATCCAGAGAGCT
GGTGCTGAAAAGATAGGCCAAGCGCAAGCACATGCATGATAGCCAAGCTC
ACGTGACTAGGAGGGTGGATGAGACATTATGACAGGTACGTAAGCTTGGG
AGGAGAAGCAGGGAGGGCTAACGTATGAAGAGACTCCGCGAATGGTGACG
TTGTTTATCCGTGTAGCCGTTCCCCGCGTTCTGCTGCTGTTTTCCTTCAC
CCCAGGGCCCTTATGGTTTTTTTTTTCTTTGCGCGCCATCCCCCCTTTTC
ACAGGCTTTTTGTTTTTTTGCACTGCCTTCCGGTTTTTCCCCCTTTCGCC
TCTGTTTTGTTTTCCCCCCCCCCCCCCCCTTTTCCTCCCCCTTCACTTTT
TTTCCCACCGCTTTTTCCCCCCCCCTTTTTCCCCTCTTTTTCCCCCTCTT
TCCTTTATTTCCCCCCCCCTCCTTATCCCTTCTTCTCTTCCCCTTTCTCT
TCCTCTCTCCCCCGTTCTTTTTTCCCCCCCCACATTTATCTCCTTTTTCT
CTGTCTATTTGCGCCGCGCTTTTGTCCATTTCTTGTTTCCACTGTGTACT
CCTCCTTCCGTTTTTTTTTTTTTGTTCCGTCATCCCTCTTCCTTCTTTTC
TCCTCCTTTTCTTTCTCTCCTCCACTATTTATCCTTAGTTCTTTTTTTGC
CTCATCATCTCTCCTTTTCTGCACGGCTTGTTTTATCCACCAGTTATTCT
ATTCTCTTTTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b10.g1 MSMg01no435_b10.g1 CHROMAT_FILE:
MSMg01no435_b10.g1 PHD_FILE: MSMg01no435_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:42 2005
         (134 letters)



>mm_chr8_24380444_24380977
          Length = 534

 Score =  213 bits (110), Expect = 4e-60
 Identities = 125/130 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctgaggaatccagagagctggtgctgaaaagataggccaagcgcaagcacatgcat 60
           ||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct: 201 ctttctgaggaatcccgagagctggtgctgaaaagatacgccaagcacaagcgcatgcat 260

                                                                       
Query: 61  gatagccaagctcacgtgactaggagggtggatgagacattatgacaggtacgtaagctt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatagccaagctcacgtgacttggagggtggatgagacattatgacaggtacgtaagctt 320

                     
Query: 121 gggaggagaa 130
           ||||||||||
Sbjct: 321 gggaggagaa 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)