BAC Information

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BAC

Clone NameMSMg01-435L15
Chromosome8 (Build37)
Map Location 102,627,328 - 102,824,024
singlet/doubletdoublet
Overlap geneLOC100042078
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435L15.T7 (MSMg01no435_l15.b1)MSMg01-435L15.TJ (MSMg01no435_l15.g1)
ACCAG526964AG526965
length778770
length of high quality
(start - end)		483 (46 - 528)468 (72 - 539)
definitionCHROMAT_FILE: MSMg01no435_l15.b1 PHD_FILE: MSMg01no435_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:34 2005CHROMAT_FILE: MSMg01no435_l15.g1 PHD_FILE: MSMg01no435_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,823,721 - 102,824,024)(102,627,328 - 102,627,795)
sequence
TCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGTTTTCCAGTGCCTGTCCTTATTTGGACCAATTTATTGAATT
AATCTCTCTGTTTTTCTGTCTGTCAGATTCTGTCTATCTATGTCTCATTT
TGTCTGTCTCACACTCTCATATATATACATACATATGTATATATACAAGA
TATGTAATATAATGAAATCTCGAATACAGATTTGAATCTCACCACACTTA
AGTGATTCTATAATACTTCTCATTCTGTACTGTAGTAAACTATATTATAG
ATATCATAAATTTTATTTATACTTAATAAATAATATACCATCATATACAT
ATAAACTGTATTATAAGAAAAGTTATATACTATATGCAATATAGTAAATT
AAGTTATATATTATATACAATATAGGTAATTCTACTCACTTTCTTCTAAG
CTTATTTCAGGCATCTGCATTCCTCTACTTACCTCCCATTATATAAATAT
CTTGAACTACATATATTGTTTCTCAAAAACCTCACGAATGTAATTGCCTT
AATTGATCTGACCTTGAATTGCTCTTGTTCGAGGACCTTAAATGTTTATT
GCTAGGGCAAAGAGTATTACATCTTTTTCCCGCACTATTTTTATTGGAAC
TTTGGCCTTTTTTATACCTACGCGAGAATCCTTTTTTTCTAATCTTTTAT
CTCCTTCTTTCCTTGTCCGCCCCTATTTTATTTTGTCCTTTTCCTCCCAC
CGTTTTTCTTTCCTCGTTTTTCTTATTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGGGTGATGAATAGCAATGTGGAAATA
AAAGTTGAATAAACCCTTTTCTCCCCAACTTGCTTCTTAGGCATGATATT
TTGTGTAGGAATACAAATCCTGGCTAAATGGTGATATGAGTGACAGACAG
ACAGACAGACATGCAGACAGACAGGTTGAACAGTGGCAATGCATGGTAAT
TAAGTGGATGAATAAACAGATAAATAAATTATACAGATACATTGACAAAT
ACACATAAATAGGCGGTCATGCATATAAACCTGTGCATATGTTTTATTAT
TAAAAGTCTCAAAATATTCAGAAGTAGCAAAATTAGTGTCACAAATCTTA
GGCATCATACCCCAATGTTAAAAGGTTATCAGTATTGCCAGTCATGTGTC
AGATCCCTCATAAAAGAATGAGAAAACTGAGCCCTAAAAAAGGTCCTCTG
ACTTCCACACCTGTGGCCATTGTAAATGTGTTCCATCCCATACACATTCG
AATTTCTAANAGTATTTTTTTAATTAAGACAAATGTTTATTCTTGAGGAA
AAAAGGCCTTCCAAAGATAACGTTTTAAACCCCCTTCCCAGAAAATTGGG
ATCTTTAACCCAAATTTAAATTGGTCCCCCCACAAAACCCCACCGGGGGG
GCTAATTTGGAATACCATTCAAGGATTATAAAACCATTCCTTCATTGTTA
TATTCCGAATCCCTCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_l15.b1 MSMg01no435_l15.b1 CHROMAT_FILE:
MSMg01no435_l15.b1 PHD_FILE: MSMg01no435_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:34 2005
         (483 letters)



>mm_chr8_102823142_102824024
          Length = 883

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 180 tacagatttgaatctcaccacacttaagtgattctataatacttctcattctgtactgta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tacagatttgaatctcaccacacttaagtgattctataatacttctcattctgtactgta 824

                                                                       
Query: 240 gtaaactatattatagatatcataaattttatttatacttaataaataatataccatcat 299
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gtaaactatatcatagatatcataaattttatttatacttaataaataatataccatcat 764

                                                                       
Query: 300 atacatataaactgtattataagaaaagttatatactatatgcaatatagtaaattaagt 359
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 763 atacatataaactgtattataagaaaagttatatactatatacaatatagtaaattaagt 704

                                                                       
Query: 360 tatatattatatacaatataggtaattctactcactttcttctaagcttatttcaggcat 419
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tatatactatatacaatataggtaattctactcactttcttctaagcttatttcaggcat 644

                                                                       
Query: 420 ctgcattcctctacttacctcccattatataaatatcttgaactacatatattgtttctc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ctgcattcctctacttacctcccattatataaatatcttgaactacatatattgtttctc 584

               
Query: 480 aaaa 483
           ||||
Sbjct: 583 aaaa 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no435_l15.g1 MSMg01no435_l15.g1 CHROMAT_FILE:
MSMg01no435_l15.g1 PHD_FILE: MSMg01no435_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:35 2005
         (468 letters)



>mm_chr8_102627128_102627995
          Length = 868

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgggtgatgaatagcaatgtggaaataaaagttgaataaacccttttctccccaactt 60
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cttgggtgatgaacagcaatgtggaaataaaagttgaataaaccctttcctccccaactt 260

                                                                       
Query: 61  gcttcttaggcatgatattttgtgtaggaatacaaatcctggctaaatggtgatatgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcttaggcatgatattttgtgtaggaatacaaatcctggctaaatggtgatatgagt 320

                                                                       
Query: 121 gacagacagacagacagacatgcagacagacaggttgaacagtggcaatgcatggtaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagacagacagacagacatgcagacagacaggttgaacagtggcaatgcatggtaatt 380

                                                                       
Query: 181 aagtggatgaataaacagataaataaattatacagatacattgacaaatacacataaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtggatgaataaacagataaataaattatacagatacattgacaaatacacataaata 440

                                                                       
Query: 241 ggcggtcatgcatataaacctgtgcatatgttttattattaaaagtctcaaaatattcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcggtcatgcatataaacctgtgcatatgttttattattaaaagtctcaaaatattcag 500

                                                                       
Query: 301 aagtagcaaaattagtgtcacaaatcttaggcatcataccccaatgttaaaaggttatca 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtagcaaaattagtgtcacaaattttaggcatcataccccaatgttaaaaggttatca 560

                                                                       
Query: 361 gtattgccagtcatgtgtcagatccctcataaaagaatgagaaaactgagccctaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattgccagtcatgtgtcagatccctcataaaagaatgagaaaactgagccctaaaaaa 620

                                                           
Query: 421 ggtcctctgacttccacacctgtggccattgtaaatgtgttccatccc 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtcctctgacttccacacctgtggccattgtaaatgtgttccatccc 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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