BAC Information

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BAC

Clone NameMSMg01-435O16
Chromosome8 (Build37)
Map Location 6,837,062 - 6,837,485
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435O16.T7 (MSMg01no435_o16.b1)MSMg01-435O16.TJ (MSMg01no435_o16.g1)
ACCAG527108AG527109
length787781
length of high quality
(start - end)
481 (43 - 523)437 (73 - 509)
definitionCHROMAT_FILE: MSMg01no435_o16.b1 PHD_FILE: MSMg01no435_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:50 2005CHROMAT_FILE: MSMg01no435_o16.g1 PHD_FILE: MSMg01no435_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTTTAGCTCTGCATCCCATATTTTAATAGGGTTATTTGGTTCTCT
GGATTCAAACTTCTTGAGTTCTTTGTATATATTGAATACTAGCCATTGAT
TGGATGTAGGGTTGGTAAAGATCTTTCCCAATCTGTTGGTTGCCTTTTGT
CTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGT
CCCATTTGTCAATTCTTTATCTTAGAGCATAAGCTATTTGAGTTCTTTTC
AGGAAAATTTCCCCTATACCCGTGTGCTCCAGGCTCTTCCTCACTTTCTT
TTTTATTAGTTTCAGTGTTTCTGATTTTTGTGCAGGTCCTTGATCCATTT
GGACTTGAGCTTTGTACAAGGAGATAAGAATCCATTTTATTTGACTGTTG
TGTCAATGTTTTCTATGGTATCTTCTGCACCTGAGATTCTTCTAGCTCTT
GTATTCTGTTGGTGATGCCCACCTCTATAACTCCCGGACCTCCTTCCTAT
GGATTCCAATCCCCCGAGTTGTCCCCCCCTTGGTATTTCCTTTATTGTTT
CCATTCGCACCTTTTACTCTTTGTAGGTGTTCATTTTTCTTTCTTTTTAT
GTCCTTATTATCCTTCTTCTATTTTCCTCCTTCTTACTTCCTTATACCTC
CTTCTTACTCTTTTTTCTCCCCTTCTTTTCCATTCCCTCTCCCCCTCCCA
TTTTCTTCTATTTCCCCTTCTTCCTTTTATTTCTTCN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACATATTCATCTGAAGGCTGCTAGTGG
AAGACTGGCTTCCAAGAAACTAGGATGAGGGTTTTAAGGCCCAGGCCCAC
CATGACACATCTACTCCAACAAGACCACACCTTATAATAGTGCCACTCCC
TGGGCTGAGCATATATAAACCATCACACATACATTTTCTTAAAGGTGTGT
GTGGGGCAGCAAAAGACTATGTCATATCTCATTTATTCTATGACATTGCA
CACCATGCTCTCTCTTTCTGACACCATTTATCTCCTGAATCCTTTAGAAA
CTATATATTTTATACTTAACCAAAATATATGCATTAAATTAATAGAAATC
TAAGTCAGTGGCTTCAATTCCAAATAGTGGGTTAAGTTTATCTTTTAAGT
CCCCAATCCATTCTTAATATCAGGACGTGCTAGATGGAAACAGAAGTTTT
CACTTGGGTCTTAATGTATTACTAGTTTCACTAAGAAAAGTAAATTCTAG
AATAAGTAAGAAACAGGGGTAGAACTTTGGTAAATTTCCCNATAGGGAAC
CCTATATTTTTCCCCTGAAGGCCAAGAAAGAACTATTGACTTAGGAGCCA
GAGGAATTTCTTAAGGTTTTACTCCCCCGCAGAATGGGATATTCCCCTTT
TTCCCCCAAAATTATTTAATTTTTTTTTTTGTCCAAAACAGGTGGTCTTT
GGATTGTTGGCCCCCCCACACGGCTTTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_o16.g1 MSMg01no435_o16.g1 CHROMAT_FILE:
MSMg01no435_o16.g1 PHD_FILE: MSMg01no435_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:50 2005
         (437 letters)



>mm_chr8_6836707_6837542
          Length = 836

 Score =  754 bits (390), Expect = 0.0
 Identities = 420/438 (95%), Gaps = 15/438 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatattcatctgaaggctgctagtggaagactggcttccaagaaactaggatgagggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 779 tacatattcatctgaaggctgctagtggaagactggcttccaagaaactaggttgagggt 720

                                                                       
Query: 61  tttaaggcccaggcccaccatgacacatctactccaacaagaccacaccttataatagtg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 719 cttaaggcccaggcccaccatgacacatctactccaacaagaccacaccttataatagt- 661

                                                                       
Query: 121 ccactccctgggctgagcatatataaaccatcacacatacattttcttaaaggtgtgtgt 180
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 -----------gctgagcatatataaaccatcacacatacattttcttaaaggtgtgtgt 612

                                                                       
Query: 181 ggggcagcaaaagactatgtcatatctcatttattctatgacattgcacaccatgctctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 611 ggggcagcaaaagactatgtcatatctcatttattctatgacattgcacaccatg--ctc 554

                                                                       
Query: 241 tctttctgacaccatttatctcctgaatcctttagaaactatatattttatacttaacc- 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 553 tctttctgacaccatttatctcctgaatcctttagaaactatatattttatacttaacca 494

                                                                       
Query: 300 aaaatatatgcattaaattaatagaaatctaagtcagtggcttcaattccaaatagtggg 359
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaatatatgcattaaattaatggaaatctaagtcagtggcttcaattccaaatagtggg 434

                                                                       
Query: 360 ttaagtttatcttttaagtccccaatccattcttaatatcaggacgtgctagatggaaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttaagtttatcttttaagtccccaatccattcttaatatcaggacgtgctagatggaaac 374

                             
Query: 420 agaagttttcacttgggt 437
           ||||||||||||||||||
Sbjct: 373 agaagttttcacttgggt 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 836
Length adjustment: 9
Effective length of query: 428
Effective length of database: 827
Effective search space:   353956
Effective search space used:   353956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)