BAC Information

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BAC

Clone NameMSMg01-436E14
Chromosome8 (Build37)
Map Location 108,931,901 - 108,932,351
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436E14.T7 (MSMg01no436_e14.b1)MSMg01-436E14.TJ (MSMg01no436_e14.g1)
ACCAG527390AG527391
length761768
length of high quality
(start - end)		454 (73 - 526)451 (83 - 533)
definitionCHROMAT_FILE: MSMg01no436_e14.b1 PHD_FILE: MSMg01no436_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:19 2005CHROMAT_FILE: MSMg01no436_e14.g1 PHD_FILE: MSMg01no436_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGACATTCACGACTATATATAGAAACCCTGTCTCAGAAAA
AGAAATGATGGGGGCTGGAGAGATGGTTTAGTGGTTAAGAGCACTGACTG
CTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACTACATGGTGGCTCAC
AACCATTTGTAATAAGACCTGGCACCCTCTTCTGGAGTGTCTGAAGACAG
CTATGGTGTACTTACATATAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATCTTAAATTTTTTTAAAGAAAAGAAATGATGCAAA
GGAAGGAACGAGAGAAAGAAAGGAAGAAAGGAAGAAGGGAAGAAAGAAAG
TAAGTTGCTATTGCAGATGACCAGGGTTCAATTCCTAGCACCCACATGGC
AGCTTACAACTGTCTACAACACCAGTTCCAGGGGATCTGACACACTCTTC
TGACCTTCATGGCGCACATGCATACATGCAAGCAAAACACTCTTACTCAT
AAATAATAAAATAGAGGGGGAAAAAAGAAGAAAAAAGTGCCACACAGAAC
TGCCTCCTGGCCAATCTGACGGAGGCGATACCTCAGTTAATATTTCCCTT
ATTCCGTCGACTTTAGCTTATGTTCATTTATATTACCTCTTTACTTCTAC
TAACTTTTCTCCCCATGTGTTGTGTACCTTCTGTAATTTCTTGCTCCGTT
CTTAAATAACN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCAGGCCAACCTAGGCTACACAGGACA
TTCAAGGCTAGCCTGGGTTTCATGGTGTGATGCTGTTCTCAGCAAATTAA
AAGCTATGGAAGCTCCCTGGGAGAACACCCACCTAGCGTGTATAGAGCCC
TGAGCTTTGTCTTCAGCAACACAACAGATAAGTAAATAATTAAAATATAA
AAATTTTAAAATGTGCACAGTAATGGAGATTTGAGGGATGGTGGCTGAAA
ACCTTATGTACCCTGCCTCACTGGTCACTCTCCCAGATAGCTGAACCCTC
AGCCTAGAACAGTTTCCCCATGAATCTTGATTATGCCAGTATCTTTTTGT
ATCCTTGAACCCCATCCTTGATTTCTGATCCTCAGACACGGAACACTTGT
AGGAAGTAAAGGAGATAAGAAGTATATTATAAACAGTAAGTAATGTCTCC
TCCAACCAAGACCCAATGGAAGCACAAATAAAACATAGACACATGGAGAC
TGGAGATTTGATTTTGTTCTGAAAAAAAAATATTCTTGAAATGAACCCAA
GAATAAAGCTTATTTTATTAAATAATATTTTAAAGCTGGTAATAAAGTCA
CATATCCTTTTATTCCCTGCACTCTGGAACGGATAAGGCGTGTACATCTT
CCTCGAATTTGTATACGAAATTCCTTTAAAATCTCATCCTGATAATTTCT
AAGCACTGCCCACGTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_e14.g1 MSMg01no436_e14.g1 CHROMAT_FILE:
MSMg01no436_e14.g1 PHD_FILE: MSMg01no436_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:19 2005
         (451 letters)



>mm_chr8_108931701_108932551
          Length = 851

 Score =  872 bits (451), Expect = 0.0
 Identities = 451/451 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaggctacacaggacattcaaggctagcctgggtttcatggtgtgatgctgttctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaggctacacaggacattcaaggctagcctgggtttcatggtgtgatgctgttctcag 260

                                                                       
Query: 61  caaattaaaagctatggaagctccctgggagaacacccacctagcgtgtatagagccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaattaaaagctatggaagctccctgggagaacacccacctagcgtgtatagagccctg 320

                                                                       
Query: 121 agctttgtcttcagcaacacaacagataagtaaataattaaaatataaaaattttaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctttgtcttcagcaacacaacagataagtaaataattaaaatataaaaattttaaaat 380

                                                                       
Query: 181 gtgcacagtaatggagatttgagggatggtggctgaaaaccttatgtaccctgcctcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcacagtaatggagatttgagggatggtggctgaaaaccttatgtaccctgcctcact 440

                                                                       
Query: 241 ggtcactctcccagatagctgaaccctcagcctagaacagtttccccatgaatcttgatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcactctcccagatagctgaaccctcagcctagaacagtttccccatgaatcttgatt 500

                                                                       
Query: 301 atgccagtatctttttgtatccttgaaccccatccttgatttctgatcctcagacacgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgccagtatctttttgtatccttgaaccccatccttgatttctgatcctcagacacgga 560

                                                                       
Query: 361 acacttgtaggaagtaaaggagataagaagtatattataaacagtaagtaatgtctcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacttgtaggaagtaaaggagataagaagtatattataaacagtaagtaatgtctcctc 620

                                          
Query: 421 caaccaagacccaatggaagcacaaataaaa 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 caaccaagacccaatggaagcacaaataaaa 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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