BAC Information

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BAC

Clone NameMSMg01-437K19
Chromosome8 (Build37)
Map Location 130,138,006 - 130,138,229
singlet/doubletsinglet
Overlap genenone
Upstream geneTomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
Downstream geneNrp1, LOC668494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437K19.T7 (MSMg01no437_k19.b1)MSMg01-437K19.TJ (MSMg01no437_k19.g1)
ACCAG528451AG528452
length858766
length of high quality
(start - end)		250 (43 - 292)404 (73 - 476)
definitionCHROMAT_FILE: MSMg01no437_k19.b1 PHD_FILE: MSMg01no437_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:08 2005CHROMAT_FILE: MSMg01no437_k19.g1 PHD_FILE: MSMg01no437_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCTTCAGTCTCTTCTGGGGGCCGTGGGCTTTGTTCCTGCAATATCTTC
CTCATTCAGTTGCTCCTGCCCAAGAGCTAAGGGTAGAGCTTGCTATAAAA
CATAAATCAGAAAAGAAAAATGGATCATTTGTAGCTGAATGTAGTTTGTG
CATGTGGTGCGTGTATGTGTGAGTATACACATGGTTGGTATGTGCTGTGT
ATGTGTGTATAGTATGTGTGTATGTGTCTGTAATATGTGTGTGGTATTAT
GTTNNNNTNNTTTTNTTTTTCCTTTTTTTTTTCTTCCTCTCCTCTCCCCC
CCCCCCTTTTTTTTTCCTTCTTTTCCCTCTCCTTCCTCCCCTTTCCCCCC
CCTCTTTTTTTTTTTTTTTCTCCTCCCCCCCCTTTTTTCTCCTCTTTCCC
TTCCTCTCCTTTTCCCTCTCTCTTTCCTCTCCTTTTTTCTCCCCTCTCTC
CCTCTTTTCTTTCCCCCTCTCCTTCCCCTCTCTCTCCTTTCCCCTTTTTT
TTTTTCCCCCCTCTTTCTTTCCCTCTTTTCCTCCCCTTCCTTTTTTCCTT
TTTCCCTTTTTTCCCTCCCTCCNTCCTCCTCTCTCCTTTTTTTTTCCCCC
CCTCCCTCCCCCTCTCTCTCTTTTTTTTTTCTCCCTTCTCCCTCTCCTCT
CTTTCTCCCTTTTNTTCTCCCTCCTTCCTTCTCCTCTTTTTTTTTCTCCT
CTTTTCCTTCCTCCTCCCCATTTTACCTCTCCACATTTTATCTCTCTCTA
CTTTCTTTATCTCTCCTTCTCCCCTCCTCTATTATATTCCTTCCCTCCCA
ATTAATAT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACTAGGCTGTACTCTCATA
GATCTGCCTGCCTTGGCCTCCTGAGTACTGGGATTAATGTTTTATGTCAC
CACTGCCCAGCTAGGATATTTTGTTTGTTTTGTTTTGTTTTTGAAAAGCA
CTATGGTTACTCACATTTGAGTTTGTAATCTCAGTACTGCAGGGACTCAC
AGAGCCAGAGCTGACTGACCAACCAGCGTAGCTTAATCAAATTCCAAGCT
AGTGAGAGACCCTGTCAAAATCAAGATGTATATCACCAGACGTCAAGGTT
GATTTCTGGACTCTATACACACACACACACACATCCACCTGACTACACAC
CACACACACACACACACACCACACCACATACCACACACACACACTCACAC
ACACACTCACACACACACACACACACACTCACACATACACACCGTGTTTT
AATATAATTGTTAGCGTAATGGTGAAAGACCTACTTTTGAACTCTTATGC
TTGAGTCCACATGTAAACCTAATTGGTCACAGGTTGGAAGCCCCCCTACT
TGGAGTGCGCCCTTGTCACTTACCCATATCATTCTTGTCAAGGCCTATCC
TCACTTCATTTTTTCCTTTCCCATCCTCTCTCACGCTTTTTGTCCCATAC
CATATTCTAAACTTCCTTTTTACCTTGTGAATTTTTACCTGACTCCCTTT
TTTTCTTCCCATTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_k19.b1 MSMg01no437_k19.b1 CHROMAT_FILE:
MSMg01no437_k19.b1 PHD_FILE: MSMg01no437_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:08 2005
         (250 letters)



>mm_chr8_130137879_130138528
          Length = 650

 Score =  402 bits (208), Expect = e-117
 Identities = 220/224 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcttcagtctcttctgggggccgtgggctttgttcctgcaatatcttcctcattc 65
           |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 351 ggaattcttcagtctcttgtgggggccgtgggctttgttcctgcaatatcctcctcattc 292

                                                                       
Query: 66  agttgctcctgcccaagagctaagggtagagcttgctataaaacataaatcagaaaagaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agttgctcctgcccaagagctaagggtagagcttgctataaaacataaatcagaaaagaa 232

                                                                       
Query: 126 aaatggatcatttgtagctgaatgtagtttgtgcatgtggtgcgtgtatgtgtgagtata 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aaatggatcatttgtagctgaatgtagtttgtgcatgtggtgcgtgtatgtgtgagtata 172

                                                       
Query: 186 cacatggttggtatgtgctgtgtatgtgtgtatagtatgtgtgt 229
           ||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 171 cacatggttggtatgtgctgtgtatgtgtgtgtaatatgtgtgt 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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