BAC Information

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BAC

Clone NameMSMg01-439D14
Chromosome8 (Build37)
Map Location 72,572,833 - 72,573,381
singlet/doubletsinglet
Overlap geneSf4
Upstream geneSlc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik
Downstream geneTm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439D14.T7 (MSMg01no439_d14.b1)MSMg01-439D14.TJ (MSMg01no439_d14.g1)
ACCAG529630AG529631
length742778
length of high quality
(start - end)		549 (68 - 616)58 (71 - 128)
definitionCHROMAT_FILE: MSMg01no439_d14.b1 PHD_FILE: MSMg01no439_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:17 2005CHROMAT_FILE: MSMg01no439_d14.g1 PHD_FILE: MSMg01no439_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGACAATCCGCGGAATTCA
AGGNCAATTCCATCTACATAGCAAGTTCCAGGCCACCCTGGGTTACACAG
TGAGACCCAGTCTCAAAAAAAAAATAAATAAATAAATATAATAAAATAAA
TGCCAGGTGGTGGTGCTGCACAACCTTGGTTTCAGCACTGGGGAGGCAAG
GACAAGTGGTCTTAATTTGAGGCCAGCCTGGTCTACAGAGTGAGTTACAG
GATAGCCAGAGTTACACAGAGAAACCCTGTCTCAAAGAACAAAACAAAAA
GACATAGAAATGTAATTTTCTCTTAAGGAAAGATACCCAAGGTTGTCTCT
GGCTTCAACATGTATGTATACTCATTGCATGTACATATGCATACACAAAT
ACAAACTAAAATTTAAAGTTTAATAAGCACATACATCGTCAGTACATACA
TGATGTTCTCTCCATTCTTGCCTCCAGTGCCACAGATGTAACAACTCAGG
ACCTCAAGAGTGCCATGCAAGCACTCTACCACTGAGCCATGCTCTAGCCC
ATGAATAGACTTAGCATCACTGGACTATGGTGACAACAGTCATGGACAGC
ATAGAGGTTTGTAGTCTAATCACACAGGGTCATGAAAGGTTTTTGTTTTT
TGAAACAAGTTCTCATACAAACCAGATTTTAGCCTTGACCTAACTTATTA
TCCCGACCCTTCTATTCTGAATGTGCCTAAATTTAATTTCCG

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCAGACATTCATTCTGTAGACCAGGCTATCCTCAAACTCAGAT
ATCCAACTGTCTCTGCCTACCAAGTGCTGGGATTAAAGGTGTGCACCACC
ACCACCTGGCCTAGAGGTTTTCTTTTTATAGTTTGTGCGCGTGTGTGTGT
GTGTAACCCCTATATCCTTTCTCTTTCCTCCCTTCCCAATTTTTTTTTTT
TTACTCACCCCCATTCCCCCCCTTTTCTTTTTTCCTTCCTATATGCCTCT
TACCACCCCAACTTTTTTCTGATTTCACAAACACCGCCCACCCACCCCCC
CCCCCACTTTTTTTTTTTCTCCCCCCCCCCTCATTTTTTTTCTTCCTCCT
CCTTCTTCCCTTTCCCTTCCTTTTTCACCCTTTTTTTTCCTTTCCCTTTT
CCTTCCCCCCTTCCCTCCCTTTTCCTCCCTCATTCCTTTTTCCCTCCCCT
TTTATTTCTTTACCTTATCCCACTCCCTATTCACGTCTTTTCTCCCTCTA
CCCCCTTCCCCCTCCCCCCCCCCTTTCTTTTTTCCTTTTTTTCTTCTCCT
TTCCCTTTTTTCCCCTTTTTTCCCCCCCCTCTTTTCTCCTTCCCTTCTTT
TCCCTATGGTCCGTTTCAAATTAACATTATTTTTTTTTTTTTTTATCACC
ATCTCCTTTTTTCATTTTTCTTTTTTCCCCCCCCCTCCCTTTTTCTCCCG
CTTTTCTATTTTTTTCACCTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_d14.b1 MSMg01no439_d14.b1 CHROMAT_FILE:
MSMg01no439_d14.b1 PHD_FILE: MSMg01no439_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:17 2005
         (549 letters)



>mm_chr8_72572525_72573473
          Length = 949

 Score = 1031 bits (533), Expect = 0.0
 Identities = 545/553 (98%), Gaps = 8/553 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagcaagttccaggccaccctgggttacacagtgagacccagtctcaaaaaaaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atagcaagttccaggccaccctgggttacacagtgagacccagtctcaaaaaaaaaataa 798

                                                                       
Query: 61  ataaataaatataataaaataaatgccaggtggtggtgctgcacaaccttggtttcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ataaataaatataataaaataaatgccaggtggtggtgctgcacaaccttggtttcagca 738

                                                                       
Query: 121 ctggggaggcaaggacaagtggtcttaatttgaggccagcctggtctacagagtgagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctggggaggcaaggacaagtggtcttaatttgaggccagcctggtctacagagtgagtta 678

                                                                       
Query: 181 caggatagccagagttacacagagaaaccctgtctcaaagaacaaaacaaaaagacatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caggatagccagagttacacagagaaaccctgtctcaaagaacaaaacaaaaagacatag 618

                                                                       
Query: 241 aaatgt----aattttctcttaaggaaagatacccaaggttgtctctggcttcaacatgt 296
           ||||||    ||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaatgtaaacaa----ctcttaaggaaagatacccaaggttgtctctggcttcaacatgt 562

                                                                       
Query: 297 atgtatactcattgcatgtacatatgcatacacaaatacaaactaaaatttaaagtttaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtatactcattgcatgtacatatgcatacacaaatacaaactaaaatttaaagtttaa 502

                                                                       
Query: 357 taagcacatacatcgtcagtacatacatgatgttctctccattcttgcctccagtgccac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagcacatacatcgtcagtacatacatgatgttctctccattcttgcctccagtgccac 442

                                                                       
Query: 417 agatgtaacaactcaggacctcaagagtgccatgcaagcactctaccactgagccatgct 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgtaacaactcaggacctcaagagtgccatgcaagcactctaccactgagccatgct 382

                                                                       
Query: 477 ctagcccatgaatagacttagcatcactggactatggtgacaacagtcatggacagcata 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagcccatgaatagacttagcatcactggactatggtgacaacagtcatggacagcata 322

                        
Query: 537 gaggtttgtagtc 549
           |||||||||||||
Sbjct: 321 gaggtttgtagtc 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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