Query= MSMg01no440_g16.b1 MSMg01no440_g16.b1 CHROMAT_FILE:
MSMg01no440_g16.b1 PHD_FILE: MSMg01no440_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:51 2005
(561 letters)
>mm_chr8_65567402_65568367
Length = 966
Score = 963 bits (498), Expect = 0.0
Identities = 543/560 (96%), Gaps = 5/560 (0%)
Strand = Plus / Minus
Query: 7 attcctaacattaacctccaatatgaatccaaaattcaagcttcattctattctaaccac 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 attcctaacattaagctccaatatgaatccaaaattcaagcttcattctattctaaccac 663
Query: 67 tcaaacccccgcaaaatatgtttaaagtgagtaattaaaattcactgcctcatattcatg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tcaaacccccgcaaaatatgtttaaagtgagtaattaaaattcactgcctcatattcatg 603
Query: 127 gatagcagaagagtgtacaaatatgtgagcatgatgcatcagaaagcagcacagatgatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gatagcagaagagtgtacaaatatgtgagcatgatgcatcagaaagcagcacagatgatt 543
Query: 187 taagacactgttcttagaagacatgatgagctactactgtggggtgattttagaagtcta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 taagacactgttcttagaagacatgatgagctactactgtggggtgattttagaagtcta 483
Query: 247 cgtgcatctaagagcacactttcaagagagtttctatttgagtttacagagctggtgagt 306
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 482 cgtgcatctaagagcacattttcaagagagtttctatttgagtttatagagctcgtgagt 423
Query: 307 gggaaagtgtactgaatggggaacttgc----aggtaggtaaaagcatcttcaggagctt 362
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 422 gggaaagtgtactgaatggggaacttgcaggtaggtaggtaaaagcatcttcaggagctt 363
Query: 363 tcctcacctcacttgcacaggatcttagccaaaagcctgagatacgatagtcacctcact 422
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 362 tcctcacctcacttgcacaggatcttagcgaaaagcctgagatgcgatagtcacctcact 303
Query: 423 tcctaacaaaagcaaataatggtttg-tttgaggatgacatgaaaagaaccccaagttat 481
|||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 302 tcctaacaaaagcaaagaatggtttgttttgaggatgagatgaaatgaaccccaagttat 243
Query: 482 caggattatctgcaaatatttgttttctaacatttgtttatatttaaatcatataaatta 541
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 242 caggattatctgaaaatatttgttttctaacatttgtttatattcaaatcatataaagta 183
Query: 542 tatttcttaagtatgagtca 561
||||||||||||||||||||
Sbjct: 182 tatttcttaagtatgagtca 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 966
Length adjustment: 10
Effective length of query: 551
Effective length of database: 956
Effective search space: 526756
Effective search space used: 526756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_g16.g1 MSMg01no440_g16.g1 CHROMAT_FILE:
MSMg01no440_g16.g1 PHD_FILE: MSMg01no440_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:51 2005
(540 letters)
>mm_chr8_65488591_65489530
Length = 940
Score = 946 bits (489), Expect = 0.0
Identities = 528/541 (97%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 1 taatgcaaagtaaaaatagaaatatttccattttgttgcaaattaaatggaatggcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 taatgcaaagtaaaaatagaaatatttccattttgttgcaaattaaatggaatggcacac 259
Query: 61 ttttgcacagacaaagggcttgtggacattcagaggtcttttgaaagaaggaatgcagta 120
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 260 ttttgcacagacaaagggcttgtggaaattcacaggtcttttgaaagaaggaatgcagta 319
Query: 121 tgttataataatataagtcacagcatgtgaaacataaacctggaatacatacctggcttt 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgttataataatataagtcacggcatgtgaaacataaacctggaatacatacctggcttt 379
Query: 181 caaatatctgctctcaatgagtaagtgagatttaaaaaaatacaattggtgtgc-tttta 239
||||| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 380 caaatgtctgctcttaatgagtaagtgagatttaaaaaaatacaattagtgtgcttttta 439
Query: 240 tcgccattcttggtcaagttaatgtaaagaataagaagagagaaatattagatctatttc 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcgccattcttggccaagttaatgtaaagaataagaagagagaaatattagatctatttc 499
Query: 300 ttgaactgtccaaaatctcccatatacctactgaatttctttcaaattcttggtctctgt 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 ttgaactgtccaaaatctcccatatacctactgaatttcttgcaaattcttggtctctgt 559
Query: 360 tttcactaagtgttataacgtgcatatttatatttgtttatatacacatattcctaatat 419
|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 560 tttcactaagtgttattacgtgcatatttatatatgtatatatacacatattcctaatat 619
Query: 420 aaactgttcactctatattctagatggaccagtatatgttatcaaggctgaacacttagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaactgttcactctatattctagatggaccagtatatgttatcaaggctgaacacttagc 679
Query: 480 actggagagccagttggttcagtttcctggagaaagccacttctccttttcccattttgt 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 actggagagccagttggttcagtttcctggagaaagacacttctccttttcccattttgt 739
Query: 540 c 540
|
Sbjct: 740 c 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
