BAC Information

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BAC

Clone NameMSMg01-441H03
Chromosome8 (Build37)
Map Location 93,570,547 - 93,704,306
singlet/doubletdoublet
Overlap geneChd9, Rbl2, Aktip, LOC667162, LOC100041222
Upstream geneTox3, LOC100041133, LOC100041156, EG626231
Downstream geneRpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441H03.T7 (MSMg01no441_h03.b1)MSMg01-441H03.TJ (MSMg01no441_h03.g1)
ACCAG531325AG531326
length755752
length of high quality
(start - end)
513 (48 - 560)472 (80 - 551)
definitionCHROMAT_FILE: MSMg01no441_h03.b1 PHD_FILE: MSMg01no441_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:13 2005CHROMAT_FILE: MSMg01no441_h03.g1 PHD_FILE: MSMg01no441_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,703,798 - 93,704,306)(93,570,547 - 93,571,018)
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATTCTCTTTATAGCTGAATAACTATATGTATATACCATGCTG
GGGGCTACGGGGTGTCTTCCACTCCCACGTGTTCTCGGCATGGCTGTATC
CTGTGGTTCTCTGTCAGTGGTACACTTTCTCTGCATCCTTACCAATATGT
ATCTAATTTTGTGATCATAGCCATTCATACACCTAACTTTTGTTCAAAGC
TCATAAAATTGAGAGCCGTGTGTTTCGGAGTAAGGTGCTATCAGGGCAAG
TGGGGCTAGTCTGGGAAAGTACAAAGGCACAGACATTTTCTGGACTCAGT
TTGCCTCATTGGGGGAGGGTGTACTGTTTTGAGACAAGATATTCATAGCC
CAAGCAGACCTCAAACTCTTCGGTTTTTTTTTAAGATTTATTTATTTTTA
TTTATATGAGTACACTGTAGTTTTCTTCAGACACACACCAGAAGAGGGCA
TCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATT
GAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAAACGCTGAGTCAT
TTCTCCAGTCTGAACTTCAATTCTTAACCCTCCTGGCTTCCGCTTTCCGA
GTTCTAGGAATTATAGACACCTGATGGTGGGCCCAGCTGAATCTATCTCT
TTACCTGGGAAACCCCCTTCCCGTGGGTTATTATCTAAAATTCCGCCCCC
CCATT
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGATTGTCACTTGGCAGCAAG
CACCTTTTTCTGCTGGGCCATGTCACTGGCAGTAAATATTCTGAATATTA
ATGTCGTAAACTTCTGGAATCGTTCTCATTTCCCTTGATTTGTAGAGTTC
TCAACTATTGGCTTGTCTCTAAGATATAGATGAATTACTAAGGAAAAGAA
TCTTCCTACAAAGTCCACTTAATTATAAGGGAGGAGGTTATGTTATACTG
TATTATATTTTGTTTTGTTTAAAACATGGTCTCACACTGTAGCTCAGGCT
GACCTGGAACTCACTAGGTAAGCTGGACTGTCCTCAAACTCAGAAGTCTT
TCTGCATCAGCCTGGAGATTAAGGTCCAGGTTATAAGTTCATTTTACCCT
GAAGGTTCATAAAGAATGGAGTGCAAGAGAAGTCATAGAGACTGAAGAAT
AGAAGGATATTAGATGAAAATGCTTAGAGGTATGCATGATACACTTGCTG
TGCGATGAGTGAATGTGCATCCTATCAAGACACAGCATAGATTTTGCAGT
TGCGTATGTAGCCAGGGACAGAATGCTTATGGAGCATTCCCCAGCCTAAT
CTTTCCCCAGGTATTAATCAAGAAGAAATATGTTTTTCCTATGCCTCCTA
ATAGATAAAAAATGTTCTAAACTCGCTTTTACAATCCGGGAACCTCCCTG
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_h03.b1 MSMg01no441_h03.b1 CHROMAT_FILE:
MSMg01no441_h03.b1 PHD_FILE: MSMg01no441_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:13 2005
         (513 letters)



>mm_chr8_93703556_93704468
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 509/509 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattctctttatagctgaataactatatgtatataccatgctgggggctacggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gaattccattctctttatagctgaataactatatgtatataccatgctgggggctacggg 692

                                                                       
Query: 65  gtgtcttccactcccacgtgttctcggcatggctgtatcctgtggttctctgtcagtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtgtcttccactcccacgtgttctcggcatggctgtatcctgtggttctctgtcagtggt 632

                                                                       
Query: 125 acactttctctgcatccttaccaatatgtatctaattttgtgatcatagccattcataca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acactttctctgcatccttaccaatatgtatctaattttgtgatcatagccattcataca 572

                                                                       
Query: 185 cctaacttttgttcaaagctcataaaattgagagccgtgtgtttcggagtaaggtgctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cctaacttttgttcaaagctcataaaattgagagccgtgtgtttcggagtaaggtgctat 512

                                                                       
Query: 245 cagggcaagtggggctagtctgggaaagtacaaaggcacagacattttctggactcagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagggcaagtggggctagtctgggaaagtacaaaggcacagacattttctggactcagtt 452

                                                                       
Query: 305 tgcctcattgggggagggtgtactgttttgagacaagatattcatagcccaagcagacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgcctcattgggggagggtgtactgttttgagacaagatattcatagcccaagcagacct 392

                                                                       
Query: 365 caaactcttcggtttttttttaagatttatttatttttatttatatgagtacactgtagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 caaactcttcggtttttttttaagatttatttatttttatttatatgagtacactgtagt 332

                                                                       
Query: 425 tttcttcagacacacaccagaagagggcatcagatctcattacagatggttgtgagccac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tttcttcagacacacaccagaagagggcatcagatctcattacagatggttgtgagccac 272

                                        
Query: 485 catgtggttgctgggaattgaactcagga 513
           |||||||||||||||||||||||||||||
Sbjct: 271 catgtggttgctgggaattgaactcagga 243


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_h03.g1 MSMg01no441_h03.g1 CHROMAT_FILE:
MSMg01no441_h03.g1 PHD_FILE: MSMg01no441_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:13 2005
         (472 letters)



>mm_chr8_93570347_93571218
          Length = 872

 Score =  905 bits (468), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattgtcacttggcagcaagcacctttttctgctgggccatgtcactggcagtaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agattgtcacttggcagcaagcacctttttctgctgggccatgtcactggcagtaaatat 260

                                                                       
Query: 61  tctgaatattaatgtcgtaaacttctggaatcgttctcatttcccttgatttgtagagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaatattaatgtcgtaaacttctggaatcgttctcatttcccttgatttgtagagtt 320

                                                                       
Query: 121 ctcaactattggcttgtctctaagatatagatgaattactaaggaaaagaatcttcctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaactattggcttgtctctaagatatagatgaattactaaggaaaagaatcttcctac 380

                                                                       
Query: 181 aaagtccacttaattataagggaggaggttatgttatactgtattatattttgttttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtccacttaattataagggaggaggttatgttatactgtattatattttgttttgtt 440

                                                                       
Query: 241 taaaacatggtctcacactgtagctcaggctgacctggaactcactaggtaagctggact 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaacaaggtctcacactgtagctcaggctgacctggaactcactaggtaagctggact 500

                                                                       
Query: 301 gtcctcaaactcagaagtctttctgcatcagcctggagattaaggtccaggttataagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcctcaaactcagaagtctttctgcatcagcctggagattaaggtccaggttataagtt 560

                                                                       
Query: 361 cattttaccctgaaggttcataaagaatggagtgcaagagaagtcatagagactgaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattttaccctgaaggttcataaagaatggagtgcaagagaagtcatagagactgaagaa 620

                                                               
Query: 421 tagaaggatattagatgaaaatgcttagaggtatgcatgatacacttgctgt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaaggatattagatgaaaatgcttagaggtatgcatgatacacttgctgt 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)