BAC Information

Click to search

BAC

Clone NameMSMg01-441M16
Chromosome8 (Build37)
Map Location 58,065,359 - 58,065,929
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441M16.T7 (MSMg01no441_m16.b1)MSMg01-441M16.TJ (MSMg01no441_m16.g1)
ACCAG531591AG531592
length761760
length of high quality
(start - end)
579 (65 - 643)571 (77 - 647)
definitionCHROMAT_FILE: MSMg01no441_m16.b1 PHD_FILE: MSMg01no441_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:42 2005CHROMAT_FILE: MSMg01no441_m16.g1 PHD_FILE: MSMg01no441_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGAGGATNCGCGGAA
TTCCACATACCTACTCACTGATAAGTGGATGTTTGCCCAGAAACTTAGGA
TACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAGGAA
GGAAGACCAAAGTGTCGACACTTTGTCCCTTCTTAGAATTGGGAACTAAA
CACCCATGGAAGGAGTTGCAGAGACAATGTTTGGAGCTGTGTCAAAAGGA
TGGACCATCTAGAGCCTGCCATATCCCGGGTTCCATCCCATAATCATCTT
CCAAATGCTGACACCATTGCATATTCTAGCAAGATTTTGCTGAAAGGACC
CAGATATATCTGTTTCTTGTGAGACTAGGCTGGGGCCTAGCAAACACAGA
AGTGGATGCTTACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGA
GGAGCTAGAGAAAGTTCCCAAGGATCTAAAGGGATCCGCAACCCTATAGG
TGGAACAACATTATGAACTAACCAGTACCCCGGGGCTCTTGACTCTAGCT
GCATATGTATCANAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCC
CATTGGACTTGCAAACTTTATATGCCCCATACAGGGGAATGTCAGGGCCT
AAAAGTGTGAGTGGGTGGNTTAGGGGAGCGNTTTTCCCCCCCCTTTTTTC
TTTACATCCTCTTTTTTTCTTTTCCTCTCCCCCTTTCCCCCTTTTTCCTC
TTCTCTCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAAACAGGTGGATGAAGTTTT
GCATGGAATAAATTTTAACTCGTTTGGACTTGATCATCTCATACCCAGCA
ATTTTAAGATGTCTCAATTTAGACTGGGAAAAATAACAACTATCCAAATA
GTTTTTATTTAAAGTAGCTATTTGGAGCTTTAAAAGTTAGAATTTCATAA
CTATAACAGTTTGGTTTCAAGCATGTTGATTATTTTATTATGCTCCTGAT
ACTGGAATTTAAGTTTTGAAAGGCACAGACAAAATAGAAATTCTAACTTC
AGTCCCTGATGCTTTCAAAACTAATGCTAGTTTTTCTTCCCTGAGTTGTT
TGGTTTGGTGGTCTTCAAGAGGATGAGATCAAAATGAGGGCTATAATTTG
TTTCTGTGTTTCCCATCCTTGTTACAGAATCTCAGTTTGTTTTTTTCAGA
TAATAGTGCCTAAATATCTCTCAAAATTATCCTTTTTCTTTTAAGTCACA
GCATTAAACTTTCTTCTAAACTACTGAAATAACCTTTGGACTAGTTTGCC
TACATCTAATGCTTTACCCTTTCAACTAATCCTAAACATTTAATCCTATA
GTCTCTTAAAACATTTAACTTGTCACCATGACTAAAAGGTTTAGATCTCC
ATGATCAACACCACATTTTTATCAACCATCTATGCCAATATTTTCTGCTT
AAACCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_m16.g1 MSMg01no441_m16.g1 CHROMAT_FILE:
MSMg01no441_m16.g1 PHD_FILE: MSMg01no441_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:42 2005
         (571 letters)



>mm_chr8_58065159_58066129
          Length = 971

 Score = 1013 bits (524), Expect = 0.0
 Identities = 560/572 (97%), Gaps = 2/572 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaaacaggtggatgaagttttgcatggaataaattttaactcgtttggacttgatca 60
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 771 atgaaaacaggtggatgaagttttgcatggaataaatttcaactagtttggacttgatca 712

                                                                       
Query: 61  tctcatacccagcaattttaagatgtctcaatttagactgggaaaaataacaactatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctcatacccagcaattttaagatgtctcaatttagactgggaaaaataacaactatcca 652

                                                                       
Query: 121 aatag-tttttatttaaagtagctatttggagctttaaaagttagaatttcataactata 179
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aatagttttttttttaaagtagctatttggagctttaaaagttagaatttcataactata 592

                                                                       
Query: 180 acagtttggtttcaagcatgttgattattttattatgctcctgatactggaatttaagtt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 acagtttggtttcaagcatgttgattattttattatgctcctgatactggaatttaagtt 532

                                                                       
Query: 240 ttgaaaggcacagacaaaatagaaattctaacttcagtccctgatgctttcaaaactaat 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttgaaaggcacagacaagatagaaattctaacttcagtccctgatgctttcaaaactaat 472

                                                                       
Query: 300 gctagtttttcttccctgagttgtttggtttggtggtcttcaagaggatgagatcaaaat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gctagtttttcttccctgagttgtttggtttggtggtcttcaagaggatgagatcaaaat 412

                                                                       
Query: 360 gagggctataatttgtttctgtgtttcccatccttgttacagaatctcagtttgtttttt 419
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 411 gaggtctataatttgtttctgtgtttcccatccttgttacagaatctcagtttg-ttttt 353

                                                                       
Query: 420 tcagataatagtgcctaaatatctctcaaaattatcctttttcttttaagtcacagcatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tcagataatagtgcctaaatatctctcaaaattatcctttttcttttaagtcacagcatt 293

                                                                       
Query: 480 aaactttcttctaaactactgaaataacctttggactagtttgcctacatctaatgcttt 539
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 292 gaactttcttctaaactactgaaataacctttggactagtttgcctacttctgatgcttt 233

                                           
Query: 540 accctttcaactaatcctaaacatttaatcct 571
           || | |||||||||||||||||||||||||||
Sbjct: 232 actcattcaactaatcctaaacatttaatcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)