BAC Information

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BAC

Clone NameMSMg01-442D12
Chromosome8 (Build37)
Map Location 109,781,146 - 109,781,542
singlet/doubletsinglet
Overlap genenone
Upstream geneSmpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b
Downstream geneLOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442D12.T7 (MSMg01no442_d12.b1)MSMg01-442D12.TJ (MSMg01no442_d12.g1)
ACCAG531916AG531917
length782797
length of high quality
(start - end)
244 (82 - 325)397 (77 - 473)
definitionCHROMAT_FILE: MSMg01no442_d12.b1 PHD_FILE: MSMg01no442_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:17 2005CHROMAT_FILE: MSMg01no442_d12.g1 PHD_FILE: MSMg01no442_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAGGATC
CGCGGAATTCTATAGTTTTCCCATGACCACAAACAGAAACATGACAGAAA
CGTAAAGACAGTACAGTGTCAGTCCATGTCTCCGATGTCCTGGCTAGTCT
TATGTCAACTTGACACAAGCTAGAGTCGTCTGAAGAGGGACCCGCAACTG
AGAACTGCTCCTCTGTATGATCCAACTGTAGGGCATTTCCTGAATTAGTG
ATTGATGGGGTTGGACCCAGACCATTGTGGGAGGTGCCATCCCTGGGCTG
GTGGTCCTAGATTCTATAAGAAAGTATTTTGGTGCTAGAGAGATGGCTCA
GTGGTTAAGAACAGTGACTATTCTTCCAAAGGTCCTGAGTTCAATTCCTA
GCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCT
TCTGCTGTGTCTGAATACAGTGACAATGTACTCATATACATTAAATAAAT
AATTCTAAAACCAACTAACCAGCCAAAGAAAGCAGACTGATATGTGGTAG
TGGTTCCAAGCCTTTCTTCCCAGTATTTTAGAAAAAGAGGTATTGATTGT
CCCTGTGAGTTCCAGATCATCCTAGTCTATTTATTTGGTTCCTGGACAGC
CTCTTCTCCCCCTATAATTTTCTTCTTTCCTATTAATTATTCCCTGTAAG
TTCACTATCTGTCTTCTTATTACATATTACACTTCACTTCCCGCTTATTA
ATCTTGTGGTCTCCTAATTTATTTTACCTCTN
NCCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGCTAGGGATGTAGTTCAGCT
GGTAGGCTAGTGTGCACGAAGCCCTGGCTTCCATTGCTAGCACTGCATAA
AGCCAGGCGTGGAGATGTGTGCCTATAACCCCAGCCCCCGAGGTAGAAAC
AAAAGATCAAGGTTGCTCTGGCTACACATCGAGTACAAGGCCAGCCTGGG
ATACACGAGACCCTGTCTGAAATGGGGGAGAAAAATTAATTCTTGCAAAG
TTGGGACTCAATCCAGATCTGATTTTTTCCCCTAAGGTTTTCATTTTTAC
CATATGGTCTCCTTCTGTAGGGAGGCAGGGAGAGGAGCCAAGAAATGCCA
AGAAAACACTCTACAAATTAACTTCTGCAGTAGGAGACTCAGGAAATTGG
GACTTGCTCCATAATTTTGCCTAACAACCTCCACAATCACACAGGTGAAG
CTTTTTCGCTCTGTAGCCACGTGTCTCCTGTGCCACAGTTCTTCTCTTTC
TGATAATAATTTTCCTTGATAGTTTGCTCCCCCCCCACTCCCCCCATATA
GTTCCTCTACAATTTTCTCTGTCCTTTTGCTCCTATGTATTGACCGCCCA
ATTTTCTCCTCCCCCTCCTCTTTTTTTTTTTTTTTTCTTCTTTTCCCCCT
CCTCTTCTCTTCTCTCTTTTTCTTTTCCTTTTCCTCCCCCCCCCTTTCCT
CCTATATTTTTCCTCTTTCCCCCCCCCTTTTCCTCTCTCCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_d12.g1 MSMg01no442_d12.g1 CHROMAT_FILE:
MSMg01no442_d12.g1 PHD_FILE: MSMg01no442_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:17 2005
         (397 letters)



>mm_chr8_109780946_109781742
          Length = 797

 Score =  729 bits (377), Expect = 0.0
 Identities = 392/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggctagggatgtagttcagctggtaggctagtgtgcacgaagccctggcttccattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggctagggatgtagttcagctggtaggctagtgtgcacgaagccctggcttccattg 260

                                                                       
Query: 61  ctagcactgcataaagccaggcgtggagatgtgtgcctataaccccagcccccgaggtag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ctagcactgcataaagccaggcgtggagaggtgtgcctataaccccagcccccgaggtag 320

                                                                       
Query: 121 aaacaaaagatcaaggttgctctggctacacatcgagtacaaggccagcctgggatacac 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagaagatcaaggttgctctggctacacatcgagtacaaggccagcctgggatacac 380

                                                                       
Query: 181 gagaccctgtctgaaatgggggagaaaaattaattcttgcaaagttgggactcaatccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaccctgtctgaaatgggggagaaaaattaattcttgcaaagttgggactcaatccag 440

                                                                       
Query: 241 atctgattttttcccctaaggttttcatttttaccatatggtctccttctgtagggaggc 300
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctgattttagcctctaaggttttcatttttaccatatggtctccttctgtagggaggc 500

                                                                       
Query: 301 agggagaggagccaagaaatgccaagaaaacactctacaaattaacttctgcagtaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggagaggagccaagaaatgccaagaaaacactctacaaattaacttctgcagtaggag 560

                                                
Query: 361 actcaggaaattgggacttgctccataattttgccta 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcaggaaattgggacttgctccataattttgccta 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)