BAC Information

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BAC

Clone NameMSMg01-442K04
Chromosome8 (Build37)
Map Location 47,323,771 - 47,324,009
singlet/doubletsinglet
Overlap genenone
Upstream geneF11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269
Downstream geneLOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442K04.T7 (MSMg01no442_k04.b1)MSMg01-442K04.TJ (MSMg01no442_k04.g1)
ACCAG532233AG532234
length792783
length of high quality
(start - end)
308 (78 - 385)238 (80 - 317)
definitionCHROMAT_FILE: MSMg01no442_k04.b1 PHD_FILE: MSMg01no442_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:53 2005CHROMAT_FILE: MSMg01no442_k04.g1 PHD_FILE: MSMg01no442_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAGCGATAAGTTGCGGGCGCAATACGACTCACGATACAAAGAGGGGCCG
CGGAATTCAAGGGTTCCCCCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAATGCTGCCCACTTTCTCCCTACCTTTTCAACAT
AGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTAATAATTCCACCAGAGAACTCCTAAA
CCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTATACTCACAC
AAGTCAATGGCCTTTCCCTACACAAAGAATAAACAGGCTGAGAAAGAAAT
TAGGTATACAACACCCTTCTCAATATGCACAAATAACACAAAATATCTCG
GCCGTGACTCTAACTATTGAAGTGAAAGATCTGTATGTATTACTTTTCCT
GTCTTTGATCATTGAAATCCTTACAACGATCTCATTATATGTCAAGTTCT
TCTCCCCGCCCCCGGCATGTTTTTGTATCTTTATTGCCCCTTCGTCTCAC
CTTTTTTTTCACTCGCTTTATTTCACTCTCTTGTCCCCCTCTCCTTTTGT
TATTTGTTACTCCCTTGTCACTTCTTTTTTTTTCTTTTTCCCCCCCCCCT
CTTTTCTTTTTTCTTCCGTTTTATTATTATTATCACCCCCTT
GGGCAAGTGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACAGTACGAAGGATGGCC
TTTAAGGTGGAAGAAGAGAACAGTAGAGTTGAGGTGCTGATGAGGGCCAC
AGATGGGGACTACAGGGCTCTAGCATCTTTGTCACTGACCCTGACCATTT
CCAGAAGGCAAAAGGCAGCCCTGAACCATGATAAGGACAGAATAAATTAG
ATCCCATCAAAGGGCTGGCCAGATGGCTCAGTGGTTAAGAGCACTTGCTG
TTCTCACAGAGTATCAAGGATATCTTTCTCAGCACTCACATAGGATGGTT
AACCACAGCCAGTAACTTCAGTCCCAGAGAATTCAATGCCCTCTTCTGTG
TACCTGTACACATGTGGTGCACAGATACTCACTCCAGCACATACACATGA
CACAATAGATTAATTCTGCACATATACTTATTTAAAAGTACGATGATTTC
TTCCCTCCCCAGCTTTTGTTTAGTGCCTCGCTCTCTTGGTACCATTCTTT
CCGTATCCCTTGTTATCTCTCCCCCACCCTTTATCCTTACTCCTCCTTGC
CCCTTCCTTTTTTTCTTCTTTCTCTACTCTTTTTTCCTTCTTTTCTTCTC
TTTCTCTTTCTTTCTCTTTTCCCCTCTCTTTTTTTTTTTTCTCCCCCCTT
CCTTTTTTCCTCCCCCCCCCCCCTTTTTTCTCCCCCCCCTTCTCCCCCTC
CACCTTTCGCTATTTTTTTTTTCTCTTCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_k04.g1 MSMg01no442_k04.g1 CHROMAT_FILE:
MSMg01no442_k04.g1 PHD_FILE: MSMg01no442_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:53 2005
         (238 letters)



>mm_chr8_47323627_47324265
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%), Gaps = 1/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacagtacgaaggatggcctttaaggtggaagaagagaacagtagagttgaggtgctg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagacagtacgaaggatggtctttaaggtggaagaagagaacagtagagttgaggtgctg 324

                                                                       
Query: 61  atgagggccacagatggggactacagggctctagcatctttgtcactgaccctgaccatt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgagggccacagatggggactacagggctctagcatctttgtcactgaccctgaccatt 264

                                                                       
Query: 121 tccagaaggc-aaaaggcagccctgaaccatgataaggacagaataaattagatcccatc 179
           |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 tccagaaggcaaaaaggcagccctgaaccatgataaggacagaatgaattagatcccatc 204

                                                                      
Query: 180 aaagggctggccagatggctcagtggttaagagcacttgctgttctcacagagtatcaa 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaagggctggccagatggctcagtggttaagagcacttgctgttctcacagagtatcaa 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 639
Length adjustment: 9
Effective length of query: 229
Effective length of database: 630
Effective search space:   144270
Effective search space used:   144270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)