Query= MSMg01no444_h14.b1 MSMg01no444_h14.b1 CHROMAT_FILE:
MSMg01no444_h14.b1 PHD_FILE: MSMg01no444_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:23 2005
(452 letters)
>mm_chr8_6604084_6604935
Length = 852
Score = 874 bits (452), Expect = 0.0
Identities = 452/452 (100%)
Strand = Plus / Plus
Query: 1 atcaagagcccagaaatcacttctagcttaaaattgtattttccccttaggatcaggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaagagcccagaaatcacttctagcttaaaattgtattttccccttaggatcaggaca 260
Query: 61 cagatttgatgaatgttctcaagttattcacccatacaggacttcttgaacactgctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatttgatgaatgttctcaagttattcacccatacaggacttcttgaacactgctctg 320
Query: 121 acattgagtactgtctgtgtaacttaatgttataaaacctggaaggcatatttatagccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattgagtactgtctgtgtaacttaatgttataaaacctggaaggcatatttatagccc 380
Query: 181 ggtccagatggaccaaaacaaagtacaattattccttcaaaagccgacctttgcatacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtccagatggaccaaaacaaagtacaattattccttcaaaagccgacctttgcatacag 440
Query: 241 attaaaatggactgcttccaagactcaaatggagaaatgaactcagtcctccaattgcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaaatggactgcttccaagactcaaatggagaaatgaactcagtcctccaattgcgg 500
Query: 301 tgcattcattacagccccattggactcagtgctggacagtgctaattagtggcatgtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcattcattacagccccattggactcagtgctggacagtgctaattagtggcatgtctg 560
Query: 361 tgttaaaagttggactcagagctggctttgccaagtggcagcgggaagaactgttatgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttaaaagttggactcagagctggctttgccaagtggcagcgggaagaactgttatgaa 620
Query: 421 gctaattacagctatcagagatgggtctattt 452
||||||||||||||||||||||||||||||||
Sbjct: 621 gctaattacagctatcagagatgggtctattt 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_h14.g1 MSMg01no444_h14.g1 CHROMAT_FILE:
MSMg01no444_h14.g1 PHD_FILE: MSMg01no444_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:23 2005
(577 letters)
>mm_chr8_6790612_6791591
Length = 980
Score = 1011 bits (523), Expect = 0.0
Identities = 565/583 (96%), Gaps = 10/583 (1%)
Strand = Plus / Minus
Query: 1 actggaattactgc-agaagagtgggtaattcaggagcagctgcttcacccaaaagccta 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 actggaattactgcaagaagagtgggtaattcaggagcagctgcttcacccaaaagccta 603
Query: 60 ccacagcctcatgaagactcacaaaatctacattcattcctcaagttccttggaaaagct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ccacagcctcatgaagactcacaaaatctacattcattcctcaagttccttggaaaagct 543
Query: 120 gcctgctggaaatctccttacttcaac-----aatggttttggtgtatataactttgagg 174
||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 542 gcctgctggaaatctccttacttcaactcctta---cttttggtgtatataactttgagg 486
Query: 175 atgggttttctaaggattttaataattaaactatagtttaatccagatgaaacgtaagcc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgggttttctaaggattttaataattaaactatagtttaatccagatgaaacgtaagcc 426
Query: 235 tagaaacatatattagggctcccttcttcacattacttaagcagactgttttagtttgtt 294
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tagaaacatagatcagggctcccttcttcacattacttaagcagactgttttagtttgtt 366
Query: 295 ttgtgtttgtcaatattctcaaagacccagatgtaaatgagttatggagatgcaatttgt 354
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 365 ttatgtttgtcaatattctcaaagacccagatgtacatgagttatggagatgcaatttgt 306
Query: 355 cgatctatatatcaaaagttggtcctgatgtggatacagcacgtgggagatgttttctca 414
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 305 cgatctatatatcaaaagttggtcctgatgtggatgcagcaagtaggagatgttttctca 246
Query: 415 tcattaaaataagacatggaaagtgtggaaaaatgggatatgccaagagtagttgctgag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcattaaaataagacatggaaagtgtggaaaaatgggatatgccaagagtagttgctgag 186
Query: 475 aaagtataaggccttgaattcagatctctggcacatatgtttaaaaaaaattgtgtaaaa 534
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 185 aaagtataaggccttgaattcagatctctggcacatatgtttaaaaaaaa-tgtgtaaaa 127
Query: 535 gcaagtttctataacatagcaccagagagcagagacaggaggc 577
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gcaagtttctataacatagcaccagagagcagagacaggaggc 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 980
Length adjustment: 10
Effective length of query: 567
Effective length of database: 970
Effective search space: 549990
Effective search space used: 549990
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
