BAC Information

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BAC

Clone NameMSMg01-444L10
Chromosome8 (Build37)
Map Location 103,050,592 - 103,050,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086
Downstream geneLOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444L10.T7 (MSMg01no444_l10.b1)MSMg01-444L10.TJ (MSMg01no444_l10.g1)
ACCAG533815AG533816
length746904
length of high quality
(start - end)
240 (75 - 314)---
definitionCHROMAT_FILE: MSMg01no444_l10.b1 PHD_FILE: MSMg01no444_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:42 2005CHROMAT_FILE: MSMg01no444_l10.g1 PHD_FILE: MSMg01no444_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAGAGAATGCGCG
GAATTCCATCTTTTACANCTAGGTTCAGAGAAAACTATATTAACCCTATT
CCACTGAGTCAAGGAATATGAGCCATTTATGGAGTATTGAAATTTGAGAA
AGAACAGTCCACATGCCTGATAGGTAATAAAGAAAATAACTTGCTCTTTA
AAACATTTGCAAAGCATGAGTTACTTCATCAACTACCAAGGTCCGTACAG
TCATATGGTCTTTATAAATCCCTGAGCCAAAACATTTTTCTAAGCTTAAG
TCCTATTTATAAGAAATTTTTTTCATATATATTCTAGGACAACGAGAAAA
AGTCTACTGATTTAGTATGAAAACATTTACAAGTATGTAAACTTAAATAG
AAATTCTTCCCATATACTTGATTGTAATATACATTGAATATTTCAAAATA
ATAGAGATGTTTAACGAACAAATATACTAGGTACTGAATTTAGAAATTAC
CTTCAACATTATTTTTTTGTACCCCTGTCCACAATTTTACTCTTTAAAGC
TATTAACCACAGTTTTTTTCAATCTACTTACCCCCTTTAACTATTTCTTC
CCCCTCATAACCATTATCTTTTTCGGACCTTTTTTCTTTTTTTTTTTTCC
CGCCTATCTACCCGAATTTTCTCCCGGGGGCCCCCCTTTTTCGTCCCAGT
ACACATTTATGGTTCTTTATACATACAAATTGGCGTTTTTCTTTTT
TTTTAATGTATTCCCCCACCCAGCGGAGAGGGGAGATCTTCCCAAAAGGG
GTTGTCCCGTAGATTTTTTCCCAAAAAGAGCGCGGCTGGCGATAGACCGT
ATTGTTGCGGGCCTTGACTAATTTATCGTTCCACCCTTACTTTATCAAGT
GGGAGCCCCCGCGTATATTCACCTCTGCGAGCCGATCGAAAGACGTGAAT
TGCTTTTTTTAAAATCTCCCACATTACATCTTATCCTTGTTACGTGCTAG
ATTCCTTCCCGTAGTTTATACTCTAACATCTTTCTTTTCACATAATGTAC
TGGTCGCAATGTAAAGAGATAATAGTGCGCGGTGTTTCCTTTAGATATTA
TTACTAAACTAATGATTTACTTACGCGATCGATATCGGGGCAGCGCAGCG
TCTTCCGTCTTTTGTTCGTGTCTGGCGCTGATTACATATCTCGTTTCGCA
TGAATCAGTATAAAAATCGTAGAACACGCTTTTTGCAATTGTTAGCACCG
TACTGATACGATTGGCGGCTGTTTTTATGTTGCTATATCCGCCCCGCGTA
ATATGGGAGGACGTGACGATATCGCGACGCCGCCCACGACCATCGCATTA
ATTAATGGTATGAAGGGGAGAGCGCCCGCCACCATCTAGCGGGCTCCGAT
ATAGACTATAGCCGCGGATGAGGTATCGGGGCTACCCGCGGCGTGTAGTA
GTGTGGTCTGCGCCACTCTTCCGCGACTCATTGTTCCGTCGACGTGAATA
TTTGGAGGAATTTGGAGGACCGCTAAAGGGACTCTCGACGGCGACGCGTG
CGAATAACGTCTGTCGTAGATACTGATAACGCGCGCTTGAGCGGAGACAA
GAATATTANTTTAGATGTCTACATGCACACACGTTATACTTACCCAGCGA
TGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_l10.b1 MSMg01no444_l10.b1 CHROMAT_FILE:
MSMg01no444_l10.b1 PHD_FILE: MSMg01no444_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:42 2005
         (240 letters)



>mm_chr8_103050391_103051030
          Length = 640

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagagaaaactatattaaccctattccactgagtcaaggaatatgagccatttatggagt 61
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 cagagtaaactatattaaccctattccactgagtcaaggaaaatgagccatttatggagt 381

                                                                       
Query: 62  attgaaatttgagaaagaacagtccacatgcctgataggtaataaagaaaataacttgct 121
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 380 attgaaatttgagaaagaacagtccacatacctgagaggtaataaagaaaataacttgct 321

                                                                       
Query: 122 ctttaaaacatttgcaaagcatgagttacttcatcaactaccaaggtccgtacagtcata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttaaaacatttgcaaagcatgagttacttcatcaactaccaaggtccgtacagtcata 261

                                                                      
Query: 182 tggtctttataaatccctgagccaaaacatttttctaagcttaagtcctatttataaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggtctttataaatccctgagccaaaacatttttctaagcttaagtcctatttataaga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)