Query= MSMg01no444_l19.b1 MSMg01no444_l19.b1 CHROMAT_FILE:
MSMg01no444_l19.b1 PHD_FILE: MSMg01no444_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:43 2005
(540 letters)
>mm_chr8_67268159_67269098
Length = 940
Score = 868 bits (449), Expect = 0.0
Identities = 509/545 (93%), Gaps = 27/545 (4%)
Strand = Plus / Plus
Query: 1 gaagcactaggatccgctctcttcattcacaggatgaggttgtttcatgtcagttagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcactaggatccgctctcttcattcacaggatgaggttgtttcatgtcagttagact 260
Query: 61 tcctttcctggccaaatattcttaaaacgaaacccatcattacccatcattaacttatgt 120
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctttcctggccaaatattcttaaaacgaaacccatcattacccat------------- 307
Query: 121 tagttgcaagccccctcccaccccaacctctaaccaggctccttctcctgtcccaccttc 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 308 -------aagccccctcccaccacaacctctaaccaggctccttctcctgtcccaccttc 360
Query: 181 tcacactctgcagggttctgccaggcaggagtcctgcccagggtcatagccggggactgg 240
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcac--tctgcagggttctgccaggcaggagtcctgcccagggtcatagccggggactgg 418
Query: 241 gggatgcttcagtccaggcttcttccatttcatgtgctcagggtgacttggtggcttaac 300
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 419 gggatgcttcagtccaggcttcttccatttcatggggtgagggtgacttggtggcttaac 478
Query: 301 ttctattcactctcaagaactctgagcatttattcacttaataatgacttattattcatt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttccattcactctcaagaactctgagcatttattcacttaataatgacttattattcatt 538
Query: 361 taacaaattcgtaatggatacccacctcctctgtactaacttgtaatctagattctagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taacaaattcgtaatggatacccacctcctctgtactaacttgtaatctagattctagag 598
Query: 421 atacaaaaatgaaatgaagagacaaaaccgccagacaccctggagttccaatgctaacag 480
||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 599 atacagaaatgaaacgaagagacaaaaccgccagccaccctggagttccaatgctaacag 658
Query: 481 ggattgtgtta-----ttttattgtcttccatcgatccagtggggacacgcacagctctc 535
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 659 ggattgtgttaatatattttattgtcttccatcgatctagtggggacacgcacagctctc 718
Query: 536 cattc 540
|||||
Sbjct: 719 cattc 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_l19.g1 MSMg01no444_l19.g1 CHROMAT_FILE:
MSMg01no444_l19.g1 PHD_FILE: MSMg01no444_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:43 2005
(239 letters)
>mm_chr8_67515243_67515882
Length = 640
Score = 456 bits (236), Expect = e-133
Identities = 239/240 (99%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 1 ctcccaatgtgttgaggtttgttttacttttggttgttgatttttttttccttcc-caca 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 ctcccaatgtgttgaggtttgttttacttttggttgttgatttttttttccttccacaca 381
Query: 60 gtaactgaagggctttgtgaggggcactgagaacaaagtattcctggccagtactataag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaactgaagggctttgtgaggggcactgagaacaaagtattcctggccagtactataag 321
Query: 120 ccatattaaagagtggccacactgggcctggtggctcaggcttgtgattccagacattca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccatattaaagagtggccacactgggcctggtggctcaggcttgtgattccagacattca 261
Query: 180 ggagggatcaggagggacagctagggcactttcctattctatagtataaagacatgggga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggagggatcaggagggacagctagggcactttcctattctatagtataaagacatgggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space: 145130
Effective search space used: 145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
