Query= MSMg01no445_l14.b1 MSMg01no445_l14.b1 CHROMAT_FILE:
MSMg01no445_l14.b1 PHD_FILE: MSMg01no445_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:02 2005
(244 letters)
>mm_chr8_114806814_114807457
Length = 644
Score = 429 bits (222), Expect = e-125
Identities = 231/234 (98%)
Strand = Plus / Plus
Query: 11 tcttctcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttt 70
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 211 tcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttctct 270
Query: 71 tctcctcgtttctttttcttttttatcaactcgggggcagatggcatcacaaggattcat 130
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tctcttcgtttctttttcttttttatcaactcgggggcagatggcatcacaaggattcat 330
Query: 131 ggaccacaagcagaatcgatactgtggagaataacaggatgggcagagtcgctgcacaga 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ggaccacaagcagaatcgatactgtggagaataacaggatgggcagagtcgctgcacaga 390
Query: 191 ccgagtgtctgtgtctctatcaagttcacatattgaaatccttgacctctggag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccgagtgtctgtgtctctatcaagttcacatattgaaatccttgacctctggag 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no445_l14.g1 MSMg01no445_l14.g1 CHROMAT_FILE:
MSMg01no445_l14.g1 PHD_FILE: MSMg01no445_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:02 2005
(479 letters)
>mm_chr8_114939470_114940348
Length = 879
Score = 733 bits (379), Expect = 0.0
Identities = 462/505 (91%), Gaps = 30/505 (5%)
Strand = Plus / Minus
Query: 1 caggacagccagggctatacagagaaaccctgtttggaaaaaccacaaaaaaaagaaaaa 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 693 caggacagccagggctatacagagaaaccctgtttggaaaaac--caaaaaaaagaaaaa 636
Query: 61 agaaagaaagaaagaaagaaagaaagaaagaaa-----------------ga---aagaa 100
| |||||||||| |||||||||||||||||||| || ||| |
Sbjct: 635 aaaaagaaagaaggaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaagga 576
Query: 101 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga----aagaaagaa 156
|| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 575 aggaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagggaaggaagaa 516
Query: 157 agaagatgtgcattgctcttgctctgtgtgttcatgcatgttcatgtgtgttcatgtgtg 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agaagatgtgcattgctcttgctctgtgtgttcatgcatgttcatgtgtgttcatgtgtg 456
Query: 217 tgtacatagacttgtgtatgtatgcgtagttcttaga-a-caaaccccaggacagctatt 274
|||||||||||||||||||||||||| || || ||| | |||||| || |||||||||
Sbjct: 455 tgtacatagacttgtgtatgtatgcggaggtc--agagagcaaaccgcactacagctatt 398
Query: 275 cagcgtcattcaagaagacagaccctctcactgcccttgtccagcaagccctaggaactg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagcgtcattcaagaagacagaccctctcactgcccttgtccagcaagccctaggaactg 338
Query: 335 gcccatctcttccatttccctagcactcagtctaagattccaggcatgctctaccatgcc 394
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 337 gcccatctcttccatttccctagcactcagactaagattccaggcatgctctaccatgcc 278
Query: 395 tagcttctggggatcaaacccaggtcctgatgcctacagggcaagcacactaacaactgc 454
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 277 tagcttctggggatcaaacccaggtcctgatgcctacagggcaagcacactagcaactgc 218
Query: 455 actctttccctagccttttgttatt 479
|||||||||||||||||||||||||
Sbjct: 217 actctttccctagccttttgttatt 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
