BAC Information

Click to search

BAC

Clone NameMSMg01-446D11
Chromosome8 (Build37)
Map Location 115,374,923 - 115,375,460
singlet/doubletsinglet
Overlap geneCntnap4
Upstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446D11.T7 (MSMg01no446_d11.b1)MSMg01-446D11.TJ (MSMg01no446_d11.g1)
ACCAG534964AG534965
length722730
length of high quality
(start - end)
101 (242 - 342)537 (68 - 604)
definitionCHROMAT_FILE: MSMg01no446_d11.b1 PHD_FILE: MSMg01no446_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:41 2005CHROMAT_FILE: MSMg01no446_d11.g1 PHD_FILE: MSMg01no446_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCAAAANGANCACTATTCGNCATCGCCGCGGAANCAGCAAGTTGC
ANTTACCGGGGGNAGAGCNGGGGNCCGGCNNNCNGAAANCCNACACCNNC
TATGCACACAAAAGAGCCANAAGAAAGNAGGCGCCCGGNGGAGGGAGGCG
GACCCCAGCNGGAAGGACNNNCCACCGGAAGGGGAAGACGGCCANCANCC
NCCCNCGGAGCAGAAGCGGGACNCCACGGAANCCGATTTTTCCTGCTCCT
CTGAGGCACTGTCAAAGAAGGAGCTGTCTGCCGAGGAGCTGTCTCAGCGC
CTTTTTTTTTTTATCANGGAGGAGAAAGCAGACGACGAGCGGATCTTTGA
CTGCGCCCAGGCTAATCTCGACGAAAGCCAGATGAGTTCGCCTACATTCC
TTACAGCTTCAATGACAGCCGTTTGCAAAGCAGCTATCATAGCTGACTGT
TCTACCTTCAGAGTGCACACTGCTGTGATCAAGCAGAGAGAGCCGATCTT
ACTCTAGTACCTAGACTCACACACGGACAAGGAACTACACGCACTTTATG
CACCACAAGCATCCATAGAATAACTTGACCATCCTGTCCACTTGCCCCGC
AAGTTTTTCGAATGCCTGTATGACCAGGTAGCGCCTTTTTTTATGCTTTC
CTACAATGGCAGAGCAGCCTGGCACCCCGCTGATCCTGCTGTGCAGGTTG
GGGNCCTCAAGCCCGTCCCTGC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTACGAAAAATTCCATAGCTATTATTCATGCTATTAGAACTGGACAA
ACCCCTGAATTACAGTGGTGTCATAACATGAGCAACAGATATCTAACAAA
GCGATTTGCTATTTGCTTTATGCTATGAAACTTATATGCCATGATTTTAT
GTAATATAACATGAAGCAATTGGAGGACAGCAAAGATGCAGCTCTATCGT
CTCCAAATGATCCCCATCCCAAGGTGCACCATAGTAGTAGGTTTCCTTTT
CCTGGGAAGATATTCTATATACTAGTAAGGATGCCAGAAGAATTGTAGGA
CAAGAGATTGAGTCTCAGGTACTCACTGAGTTAGGTCCGCAGATAGGCTG
CTAAGCAGATATGGAGCCAAGGTGAAGAGCAACTTGTTATGGAAAGAAGA
GAGTCATCCTGGCAACACAGGCAGAAGAAAGAATGACAAATTATTCAAAT
GTAAGAGGAATTAAGATTCTTAGCTGTTCTATAATTCTGGATAAAATCAA
TTCCTTCATTGCCATACCCAGAAAATATCTCAGGATCTCTCCAGTTTTTC
TAATAGCGTATATAATATCTAAGGACCTCTAGGCTTAACAGCTGAATATA
TAATATTTGCGTGTGCGTGTGTGTGCGCGTTCGTCCACTCCTCCTATTCC
TTTCTCCTCCCTCTCCCCTTCCCTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_d11.g1 MSMg01no446_d11.g1 CHROMAT_FILE:
MSMg01no446_d11.g1 PHD_FILE: MSMg01no446_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:41 2005
         (537 letters)



>mm_chr8_115374723_115375660
          Length = 938

 Score =  994 bits (514), Expect = 0.0
 Identities = 532/538 (98%), Gaps = 1/538 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagctattattcatgctattagaactggacaaacccctgaattacagtggtgtcataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagctattattcatgctattagaactggacaaacccctgaattacagtggtgtcataac 260

                                                                       
Query: 61  atgagcaacagatatctaacaaagcgatttgctatttgctttatgctatgaaacttatat 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagcaacagacatctaacaaagcgatttgctatttgctttatgctatgaaacttatat 320

                                                                       
Query: 121 gccatgattttatgtaatataacatgaagcaattggaggacagcaaagatgcagctctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gccatgattttatgtaatataacatgaagcaattggaggacagcaaagatgcagctctag 380

                                                                       
Query: 181 cgtctccaaatgatccccatcccaaggtgcaccatagtagtaggtttccttttcctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtctccaaatgatccccatcccaaggtgcaccatagtagtaggtttccttttcctggga 440

                                                                       
Query: 241 agatat-tctatatactagtaaggatgccagaagaattgtaggacaagagattgagtctc 299
           ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaactctatatactagtaaggatgccagaagaattgtaggacaagagattgagtctc 500

                                                                       
Query: 300 aggtactcactgagttaggtccgcagataggctgctaagcagatatggagccaaggtgaa 359
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtacttactgagttaggtccgcagataggctgctaagcagatatggagccaaggtgaa 560

                                                                       
Query: 360 gagcaacttgttatggaaagaagagagtcatcctggcaacacaggcagaagaaagaatga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcaacttgttatggaaagaagagagtcatcctggcaacacaggcagaagaaagaatga 620

                                                                       
Query: 420 caaattattcaaatgtaagaggaattaagattcttagctgttctataattctggataaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaattattcaaatgtaagaggaattaagattcttagctgttctataattctggataaaa 680

                                                                     
Query: 480 tcaattccttcattgccatacccagaaaatatctcaggatctctccagtttttctaat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaattccttcattgccatacccagaaaatatctcaggatctctccagtttttctaat 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space:   489056
Effective search space used:   489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)