BAC Information

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BAC

Clone NameMSMg01-448M10
Chromosome8 (Build37)
Map Location 73,240,544 - 73,240,785
singlet/doubletsinglet
Overlap gene2410018E23Rik
Upstream gene1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1
Downstream geneLOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448M10.T7 (MSMg01no448_m10.b1)MSMg01-448M10.TJ (MSMg01no448_m10.g1)
ACCAG536908AG536909
length822753
length of high quality
(start - end)		126 (71 - 196)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no448_m10.b1 PHD_FILE: MSMg01no448_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:10 2005CHROMAT_FILE: MSMg01no448_m10.g1 PHD_FILE: MSMg01no448_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCTTTTTTCCTTTCCCTCTCTCTCTATTTTCATTCACCGCGGATTC
AATATGTATTTTCGCTGACCTTGAACCCAGATATCCACCTGCCTCTGGCT
CTCCAGTGCTGGGATTAAAACTGTGCACCACCACTGTATGACCATCACTT
CCCTTATTTCCACCCCCCCCAAAAGTTGCTCCCTTTTATTTGTATGTATG
CAAACACACACCATAGCAGGACACTGATAGGTCAGACAACAGCTTGCAGG
AGTTCGTAGTCTCCTCCTACTGTGTAATACTGGATGATTGAACTCACATC
CTCATGCTTGGCAGCAATTTTTTTTGCCTATTGAGTCCTCCCTCTGGCTC
CCTCTTTTCTCTTTCACTCTGGCCTTGATTCTTTTTCTTATCTGGATGTT
AAACAGCCCATGAGTATTATTTTGACCGTCCTCTATGCCTTTTTCTCCTT
TTTACCTCCTTTTTTTTTTTTTCCACCACTTTCTTTTTTCTTTTTGCTAT
TCTGCCTCTCCCCCTTCTTCCTCACCATCCAATCTGCATTTTTTACAATT
CTCCCCTTTCTTCCTTTTCTCCCACCTTCTCCCCCCTTTGTACTCTTTCT
CCCCCTTCCCGCTACACCTCCCTATTTTTCGCGGTTTCCCCCCCATTATT
ACCAATAGCTTTAAACCCCCTGAGTATTTTTAATTTTAGAGCATACCCAT
AATCTACCCTGCTCAACAAACACTATATTTAACCCACCTTTTTTTCCCCT
CCTTTTTTTTTTTTTCACTACACTTCACATTATCTACTTTACCTTCTTTT
CTATCTTCTTTTTCCCCCCGCT

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACTAGCAGAATTCCAAAGTCCCCAACGTATCGGTCA
GAGCCACAGCACATGCTGGGGCACCCCAAGGCGTATGGTATCCCAGCAGG
GGCCACAAGCCATGGGACCCCATTGGTGCAGAGGCCGAGCTGGACCGCAA
GCCTTCAGCTGAGCTGCTGATGTCAGTACAGGGCATGGAGAAAGTTGTCG
TCTAGGCCGTTGTCACCATCCAAGCGTGCGCTCGTGGCTACCTAGTGCGC
CGCACTGTGAAAGTGTGGCTCCAATGGGCCACCATCATCCAAGCTACGTG
GCGTGGTTATCGTGTACCACCCAATCTGGAAAGGCTGTTCAGGGCCACCA
CCATCATCCAGGCTGCCTGGCGCGGTTATTGCATTCGCCGGGCCCGGGCC
CGCCAGGTACTGCTCCCTATTGCATGGTCAGAGCACAGTGGTCGAACCAC
GGGAAACTTGGACAATAGAAAAAGTTTCGAGCACCGGTGGTTCCCATCCT
GCCATTCAAATGTCTGCTGTGGCTGTCAATCTTCTGGGTCCCCCGGTCTA
GAGCCGCCCCTTTGTGTGTTGTTCTTGGTACCCCTCCCTCCCTTTTTTTT
TTTTTTTTTTTTTACTCACTCTTCCCCTAGTTTGCCGTATTCTTTCTTGT
ACTTCTCGCCCCCGTTGCCACTGTTGGACCTTTTTCTTCATCTCTCTTTT
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_m10.g1 MSMg01no448_m10.g1 CHROMAT_FILE:
MSMg01no448_m10.g1 PHD_FILE: MSMg01no448_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:10 2005
         (242 letters)



>mm_chr8_73240344_73240985
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaagtccccaacgtatcggtcagagccacagcacatgctggggcaccccaaggcgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaagtccccaacgtatcggtcagagccacagcacatgctggggcaccccaaggcgtat 260

                                                                       
Query: 61  ggtatcccagcaggggccacaagccatgggaccccattggtgcagaggccgagctggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtatcccagcaggggccacaagccatgggaccccattggtgcagaggccgagctggacc 320

                                                                       
Query: 121 gcaagccttcagctgagctgctgatgtcagtacagggcatggagaaagttgtcgtctagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gcaagccttcagctgagctgctgatgtcagtacagggcatggagaaagttgtcgtccagg 380

                                                                       
Query: 181 ccgttgtcaccatccaagcgtgcgctcgtggctacctagtgcgccgcactgtgaaagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgttgtcaccatccaagcgtgcgctcgtggctacctagtgcgccgcactgtgaaagtgt 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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