BAC Information

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BAC

Clone NameMSMg01-449C11
Chromosome8 (Build37)
Map Location 82,610,807 - 82,611,098
singlet/doubletsinglet
Overlap genenone
Upstream geneD630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip
Downstream geneLOC546075, Gypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449C11.T7 (MSMg01no449_c11.b1)MSMg01-449C11.TJ (MSMg01no449_c11.g1)
ACCAG537196AG537197
length730729
length of high quality
(start - end)
292 (335 - 626)249 (80 - 328)
definitionCHROMAT_FILE: MSMg01no449_c11.b1 PHD_FILE: MSMg01no449_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:41 2005CHROMAT_FILE: MSMg01no449_c11.g1 PHD_FILE: MSMg01no449_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGAAG
GGGCGGAATTCTTTGAAACTACCAATAAAATCAGCAATCCCATAGCTAAA
CTTAGAGAAGAAAAAGAAACACCAAATAAATAAAATCAGAACTACAAGTG
GAGACGTTACAACAGATGTCTCAGAAATAAGATGCACCATAAGAGACTAT
TGTGAGCAACCGTATGCCAATAAGCTGGATAACCAAGAAGAAACAGACAC
ATTTCTAGAATATGCTAATGTTGAACTGGGAAGAGACAGCAAGCTGGAGA
AGCCCAGCAATAAATGAAGACATTGTATTTTTATTTAAAACCTTCCACCA
CCACCAACAAAGCCCAGGACCAGATGGCTCCATGGCTTCAGTCTAACAAA
CATACCAAGAATTATTGCCAATACTTCTTACATTTTTCCAAAAATATATA
ACTAAAGGGAATACTTCCAAACATATTTTATTAAGCCATCATCCTAATGC
CTAAGCCAGAGCAAGAAAAAACCCTATAACTCATGTATTTAAAAATAGTT
TAACATTTTATATTAATATGCTGTGTGTAGCAAGAAGAAAGAAATGCACA
TGGTTCAGCACCTCTCAGTACTTCACAGAAGAGTACATTGGTGGGAGGGA
TGCATACCTCTAAAAGCTTTTAGAAATAATGAAGAGTCTGTCACTGAGTG
GCTACTACAGTTAGCATCTTTGCTAGGTTN
GGTGTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAAATTCCTACATTTTCACTTCCCAA
ATGCCCTCAGTTGTTTCCTTTATTGCTTCTATTCCATTTTTAGGTCTTGA
ACAGTTTTATTCTTCTCCTTTCACTGTTTGTATTTTCCTGGATTTTCAAA
AGAGATTTATTCATTTGCTTGTTTGTGTTTTCCTGGATTTCATTGAGTTA
TTTTTTCATCTCCTCCAAATGTTTGTGTTTTTATGCATTTTAAAAGGATT
TATTCATCTTCTCTTGGAGAACCTCTATCATCTTCACAAGGTGGTTTTAA
GGTCTTCTTCTTGTGCTTTAGCCATATTGGAATATTCAGGGACTTCTTTA
GTAGGATATGTGGTTTCTAGTGAATACATATTGCCCTGGCTGTTGTTGAT
TGTGCTTTTACACTGGTATCTAGTCATCTGGGATTGGGATGACTCTAGGT
CTAGATGCTGATTTCTGGATTTGTTATGTAGGTTCCTTCTCCCTTGATTT
CATTTTTCTCTCTGGATTTTTTGAGAGTATGATGTCTGTGTGTTGCCTGT
CATGAAATTTTCTTTGAAAATTTTGCGGACACTGTTTCTTCCAGGTAATA
ATGCATCTTGTATTTTTGTGACCTGCCCCAAATGACAGGTATATGCTAAT
GGTTTTCACTTTATCACATTAGACATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_c11.b1 MSMg01no449_c11.b1 CHROMAT_FILE:
MSMg01no449_c11.b1 PHD_FILE: MSMg01no449_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:41 2005
         (292 letters)



>mm_chr8_82610425_82611116
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaaccttccaccaccaccaacaaagcccaggaccagatggctccatggcttcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttaaaaccttccaccaccaccaacaaagcccaggaccagatggctccatggcttcagtct 615

                                                                       
Query: 61  aacaaacataccaagaattattgccaatacttcttacatttttccaaaaatatataacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aacaaacataccaagaattattgccaatacttcttacatttttccaaaaatatataacta 555

                                                                       
Query: 121 aagggaatacttccaaacatattttattaagccatcatcctaatgcctaagccagagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aagggaatacttccaaacatattttattaagccatcatcctaatgcctaagccagagcaa 495

                                                                       
Query: 181 gaaaaaaccctataactcatgtatttaaaaatagtttaacattttatattaatatgctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gaaaaaaccctataactcatgtatttaaaaatagtttaacattttatattaatatgctgt 435

                                                               
Query: 241 gtgtagcaagaagaaagaaatgcacatggttcagcacctctcagtacttcac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtgtagcaagaagaaagaaatgcacatggttcagcacctctcagtacttcac 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)