BAC Information

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BAC

Clone NameMSMg01-449C12
Chromosome8 (Build37)
Map Location 13,786,098 - 13,786,595
singlet/doubletsinglet
Overlap geneUpf3a
Upstream geneAtp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16
Downstream geneAF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449C12.T7 (MSMg01no449_c12.b1)MSMg01-449C12.TJ (MSMg01no449_c12.g1)
ACCAG537198AG537199
length732770
length of high quality
(start - end)
503 (75 - 577)196 (119 - 314)
definitionCHROMAT_FILE: MSMg01no449_c12.b1 PHD_FILE: MSMg01no449_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:41 2005CHROMAT_FILE: MSMg01no449_c12.g1 PHD_FILE: MSMg01no449_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATCC
GCGGAATTCCTGTGGCTTCCCATCTGCTGCTTAGGTCAGCCCTGCGTTGC
TCGCATCCCCACAGGCAGGGAACCTTCTGGCTGGGTGGTGGTGCAAGCAA
TGAGAGATTCCCCTTCTCAGGGTTCAGTTACTGGTCCCTCACTGGGGAAA
ACACTCCAGACTCAACGTGTGTAAGGGATGCAGTCCGGTTTTGCTCATCA
CACAGTTTATTAAAAGCTACGCCGAGGAAGGCATGGTAACGTGCTGACGA
GGTGACTTGCCCGCTCCTAACGTGTTTGTGCACTGACAGCTGGGAGGGGA
CTGCAACTGCGAGCGCCCGCGGGGTCCTCCATCCTTCACCGGTGGGTGTC
CCGCAGCAGCCCTCACCTGAGGTCCGCAGCCACCACCTCGAAGTAATCGT
GGGCCGGCAGGGGACGCAGTTGCTCTTCCAGCTGCTCTTTGGTGAGGCCC
GGTGGCAGACGCCGGAGGACCACCTGGGATGACCATTGCGTTCACTCAGG
TGCTGCCGCCCGCCACGCCCACCCAGTCTGAGGCTCCCCGGAGCTCGGGG
GACCGCGTCTCCCCAGCTCCACCCCGACTCGCTAATCCTAGTCCAGCCTG
CTCGCAACAGTCCGTATCACTTCTGAGTATAGGCTCCGCCCCTGAGATGA
TGTATAACCCGCCCCGCCCTCCCCTAGACCCG
NNNCCCGATGAAGTGGGAGGCCTGGNGGCGCCTGTTTCCGACCTGAGGNG
AACNANAGAAGTTACANGACTGCGTANTGCGACCGNTTAAAACTGAGAAC
TTTGCAATATGATTGTTCCCCTACGTAGATGTTGTGCACGCCTAGCTCCC
GCAGATGCCAGAAAAGGGGGCCATTCCCTGGAACTGAAGGTGAGGATGGT
GGTGAGCCACTTTGGGGGTATGAAACCCAGGCCCTCTGCAGAACTTTTTC
CGCTCCTCACTGCTTAGTCATCTCTCCAGCCTCATTTGCAGGCTTTCCCA
AGAAGTTCTTCTCATGNTTGTGGGGGNGNAGGGGGGAAGANGNNNNNNNN
TTTTTTTCCCCCCCCCCTTTTGTTGGGGTGATTTTGTTCATTTTCCTTAT
ATTGGGCTCCCCCTTTTTTTTTTTTTTTGTAAGTCCCGCACGGTATTTCG
CCTCCCAATTTCTTTTACATGTCTTTATTAATCCACTCTAGCTTTGCCCC
TTTTCTTTTATCGTCTTTAATTACTCCTCCTTCGCCTCAATTTTTTGTTA
CCTCACTTTTCTCATCGGTTCACACTCGTGGCGTGTTCACTTTTCTCCAA
TCCCATTTTACCTTTATCCTCCTCACTCTATTTCCTCCTCCGCTTCTTTT
TCCTAACAAGGCCCAGAGTTTTTTTTTTTTTTTTTTTGTTCCAGGGCGTT
ATGCTTGTGTTGTGTGTTCCATCATATGTGTTTGGATTCCTGTAATTAGC
CAGTTTTAGAAACATCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_c12.b1 MSMg01no449_c12.b1 CHROMAT_FILE:
MSMg01no449_c12.b1 PHD_FILE: MSMg01no449_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:41 2005
         (503 letters)



>mm_chr8_13785898_13786800
          Length = 903

 Score =  870 bits (450), Expect = 0.0
 Identities = 486/498 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgcttaggtcagccctgcgttgctcgcatccccacaggcagggaaccttctggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgctgcttaggtcagccctgcgttgctcgcatccccacaggcagggaaccttctggctgg 639

                                                                       
Query: 61  gtggtggtgcaagcaatgagagattccccttctcagggttcagttactggtccctcactg 120
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| 
Sbjct: 638 gtggtggtgcaagcaatgagagattccacttctcagggctcagttactggtccctcacta 579

                                                                       
Query: 121 gggaaaacactccagactcaacgtgtgtaagggatgcagtccggttttgctcatcacaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 578 gggaaaacactccagactcaacgtgtgtaagggatgcagtccggttttgctcatcataca 519

                                                                       
Query: 181 gtttattaaaagctacgccgaggaaggcatggtaacgtgctgacgaggtgacttgcccgc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 518 gtttattaaaagctacgccgaggaaggcatggtaacgggctgacgaggtgacttgcccgc 459

                                                                       
Query: 241 tcctaacgtgtttgtgcactgacagctgggaggggactgcaactgcgagcgcccgcgggg 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tcctaacgtgggcgtgcactgacagctgggaggggactgcaactgcgagcgcccgcgggg 399

                                                                       
Query: 301 tcctccatccttcaccggtgggtgtcccgcagcagccctcacctgaggtccgcagccacc 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcctccatccttcaccagtgggtgtcccgcagcagccctcacctgaggtccgcagccacc 339

                                                                       
Query: 361 acctcgaagtaatcgtgggccggcaggggacgcagttgctcttccagctgctctttggtg 420
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 338 acctcgaagtaatcgtgcgccggcagggggcgcagttgctcttccagctgctctttggtg 279

                                                                       
Query: 421 aggcccggtggcagacgccggaggaccacctgggatgaccattgcgttcactcaggtgct 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggcccgggggcagacgccggaggaccacctgggatgaccattgcgttcactcaggtgct 219

                             
Query: 481 gccgcccgccacgcccac 498
           ||||||||||||||||||
Sbjct: 218 gccgcccgccacgcccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)