Query= MSMg01no449_j15.b1 MSMg01no449_j15.b1 CHROMAT_FILE:
MSMg01no449_j15.b1 PHD_FILE: MSMg01no449_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:16 2005
(463 letters)
>mm_chr8_97466967_97467828
Length = 862
Score = 808 bits (418), Expect = 0.0
Identities = 450/462 (97%), Gaps = 7/462 (1%)
Strand = Plus / Plus
Query: 5 gaattcacccaagc-tgtcccacagtgaggtctcagtagatggttactgctgtcgggaga 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacccaagcct-taccacagtgaggtctcagtagatggttactgctgtcgggaga 263
Query: 64 tctgtatttgtattactatttgggtgtgcatgtgtgtgtggtgtgtgtgcacctatgcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgtatttgtattactatttgggtgtgcatgtgtgtgtggtgtgtgtgcacctatgcac 323
Query: 124 ccttgcacatgtgcactgaagccggaggaggatgttgggtatcctgttctatgactttgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccttgcacatgtgcactgaagccggaggaggatgttgggtatcctgttctatgactttgt 383
Query: 184 cttatgctctcgagacagggcttctcaccaaacatggagccgggctgacagccagcaacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttatgctctcgagacagggcttctcaccaaacatggagccgggctgacagccagcaacc 443
Query: 244 ccagtaatcacctagtaactggagtctactttct--ctcttccgcatgatacccccttcc 301
|||||||||||||||||||||||||||||||| | | | |||||||||||||||||||
Sbjct: 444 ccagtaatcacctagtaactggagtctacttt-tgccac--ccgcatgatacccccttcc 500
Query: 302 ccctcccccacttccaccagtcgtaggattacaggctcctgtgaccatacttggcttttt 361
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctcccccacttccaccagttgtaggattacaggctcctgtgaccatacttggcttttt 560
Query: 362 acataggtgctggggtctaagctcagggcctccagtttgtgcacaaaagcttttatgtaa 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acataggtgctggggtctaagctcagggcctccagtttgtgcacaaaagcttttatgtat 620
Query: 422 tgaccgtctcttcagccccctattgttgttaacagctttaat 463
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaccatctcttcagccccctattgttgttaacagctttaat 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 862
Length adjustment: 10
Effective length of query: 453
Effective length of database: 852
Effective search space: 385956
Effective search space used: 385956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_j15.g1 MSMg01no449_j15.g1 CHROMAT_FILE:
MSMg01no449_j15.g1 PHD_FILE: MSMg01no449_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:16 2005
(507 letters)
>mm_chr8_97650156_97651064
Length = 909
Score = 949 bits (491), Expect = 0.0
Identities = 504/509 (99%), Gaps = 2/509 (0%)
Strand = Plus / Minus
Query: 1 accagtttgaggggattcaggaaaaatggttttcct--gtcttagtttaggcagttctgt 58
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 709 accagtttgaggggattcaggaaaaatggttttcctcagtcttggtttaggcagttctgt 650
Query: 59 cccctagaagctatagctaaagtgacttccccagaggccaacctggaggtcccctgcaaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 cccctagaagctatagctaaagtgacttccccagaggccaacctggaggtcccctgcaaa 590
Query: 119 cccattttgctgtatccttcagccccacctgctagcatcctcttcccgccctgatggtgc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cccattttgctgtatccttcagccccacctgctagcatcctcttcccgccctgatggtgc 530
Query: 179 gccctgttgtgatggccgcctccctcctccaggcagacctccactctcctgctgatcagc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gccctgttgtgatggccgcctccctcctccaggcagacctccactctcctgctgatcagc 470
Query: 239 cactacttttcttgtaggtgggcggctctttggcatcgggaggtgctcaagcctgtccgg 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cactactttgcttgtaggtgggcggctctttggcatcgggaggtgctcaagcctgtccgg 410
Query: 299 ggcaccaggcccagaccccgtggtacataggaccgtggaggccatgtcccagcttcagga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggcaccaggcccagaccccgtggtacataggaccgtggaggccatgtcccagcttcagga 350
Query: 359 ggaactggtagtccttcgggagaggctggccctccacgacagtgaccggcaagccacaac 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggagctggtagtccttcgggagaggctggccctccacgacagtgaccggcaagccacaac 290
Query: 419 cacccagctgcagaaccaggtacctggggaggcagggatgagcagaggccactcactgcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cacccagctgcagaaccaggtacctggggaggcagggatgagcagaggccactcactgcc 230
Query: 479 ctctggggaacaggtcagaggacattgtc 507
|||||||||||||||||||||||||||||
Sbjct: 229 ctctggggaacaggtcagaggacattgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 909
Length adjustment: 10
Effective length of query: 497
Effective length of database: 899
Effective search space: 446803
Effective search space used: 446803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
