Query= MSMg01no449_n12.b1 MSMg01no449_n12.b1 CHROMAT_FILE:
MSMg01no449_n12.b1 PHD_FILE: MSMg01no449_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:34 2005
(549 letters)
>mm_chr8_58974159_58975106
Length = 948
Score = 714 bits (369), Expect = 0.0
Identities = 391/403 (97%), Gaps = 9/403 (2%)
Strand = Plus / Minus
Query: 1 tttcatatatatagatatatttggttttggttgacctcctgcctctgggttttctatttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 394 tttcatatatatagatatatttggttttggttgacctcctgcctctgggttttcta-ttt 336
Query: 61 tttttccaaatatgattttaatttaaatagaattacatcactttccacttctcttcatct 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 335 tttttccaaatatgattttaattgaaatagaattacatcactttccacttctcttcatct 276
Query: 121 cttcccaactattctccttcaaaccaaacccacacccctccattcttaattagccccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cttcccaactattctccttcaaaccaaacccacacccctccattcttaattagccccttt 216
Query: 181 atattttatgtacattgtgatggtttgaatatgtttgtccttgggtttggcactataagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atattttatgtacattgtgatggtttgaatatgtttgtccttgggtttggcactataagt 156
Query: 241 ggatgtggtcttgttggagtaggtgtggcattgttggaggaaatgtgtcattgtgagagt 300
||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 155 gga--------tgttggagtaggtgtggccttgttggaggaaatgtgtcattgtgagagt 104
Query: 301 agcctggaagaccctcatcctagctccttgggaagccagcctttttctagtgaccttcaa 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 atcctggaagaccctcatcctagctccttgggaagccagcctttttctagtgaccttcaa 44
Query: 361 atgaagatgtagaactctcagctcctcctgcactatgcctgcc 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 atgaagatgtagaactctcagctcctcctgcactatgcctgcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 948
Length adjustment: 10
Effective length of query: 539
Effective length of database: 938
Effective search space: 505582
Effective search space used: 505582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_n12.g1 MSMg01no449_n12.g1 CHROMAT_FILE:
MSMg01no449_n12.g1 PHD_FILE: MSMg01no449_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:34 2005
(295 letters)
>mm_chr8_58811167_58811861
Length = 695
Score = 547 bits (283), Expect = e-160
Identities = 292/295 (98%)
Strand = Plus / Plus
Query: 1 gaggaaagaaggagagaataatctgtgttgtccactagagatggggcagagatggatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggaaagaaggagagaataatctgtgttgtccactagagatggggcagagatggatgag 260
Query: 61 agttcacagtaggagtctgctacagagttgagggtgattctaggagattttatttggaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcacagtaggagtctgctacagagttgagggtgattctaggagattttatttggaaa 320
Query: 121 agaaggggagagtgaagagctacagttagcctaactgttttcttggcatatgcatctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggggagagtgaagagctacagttagcctaactgttttcttggcatatgcatctgga 380
Query: 181 gtggtcccaagtattagacagtggtttcagatacaggtattagatattaatactcagcat 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtcccaggtattagacagtggtttcagatacaggtattagatattaatactcagcat 440
Query: 241 gccccatgctggtcccttgtcctccaatatgggcaaaaactaatttgaagtcaat 295
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gccccatgctggtcccttgtcctccaatatgggcaaaaactaacttgaagtcaat 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
