BAC Information

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BAC

Clone NameMSMg01-449P21
Chromosome8 (Build37)
Map Location 58,820,986 - 58,821,382
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, Glra3, LOC664812, Hpgd
Downstream geneLOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449P21.T7 (MSMg01no449_p21.b1)MSMg01-449P21.TJ (MSMg01no449_p21.g1)
ACCAG537830AG537831
length776781
length of high quality
(start - end)		254 (78 - 331)397 (83 - 479)
definitionCHROMAT_FILE: MSMg01no449_p21.b1 PHD_FILE: MSMg01no449_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:45 2005CHROMAT_FILE: MSMg01no449_p21.g1 PHD_FILE: MSMg01no449_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAAT
CCGCGGAATTCAGAATGAAGTTTCATTGAATATTCAGAAGGCACCAGTGT
GCCAGACACACACTTGAATGGTGCTGTCCTTTACCCTCAGGAAGCTTTTT
AGTGTCACAAGGCTCAATGGCCAATTATTGTTCTTAATGTGTGTGCTACC
AATGTCCTGTGCAGAAACACTTGTGCCTGCAAATTGAAGCACATCCCTAT
CTTTCTCCAGTGTTACAGTCAGGGTATCAGGTCTCATGTTGAAGTCTTTG
GTCCATTTGAGGTTAAATTTTGGGCAGGATGATATATTATCTTCTAGTTT
CCTTCTTTCCACTTTGAGCTATCTTGGTTGATTAGCACTACTGTTGAAGA
TGTCTTTTTCAATGTTTCTTTGTTTGTTGCTTCTTTGACAAAAATCAGGA
ATGTGGGCTTGTATCTGGGTCCTTAATTCTATTTCATTGATCAATGTGTC
TTTTTTTTAATGCCAAGGCCATGCTGTTTTGATTATTATAACTTAAAATT
ACCTGATGGCGCAACTTTAAGTTAGGGATGGGGGGGATGGTATATCCTAT
AAAAAGTGTGCCTATGCCTGTAAAGTTCTAAAAAACATTTTGATATTTCA
AAACCATCGGGATGCTTTGGTTTATATTTGCTCCCTCTTATATTTTACAA
ACCTAAACTCGCGCATATTTATATCCCCCCCTTATACTATTCGTATGGTA
AAATCATTATTTTTTCTCTTTTTTCC

NNNNNTTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTCTCAGTATCCTTC
AAGTTGTAGCTTACAAGGACACTGGACATTAAGCTGTTCCTTTCTGTTTT
GTGTCACTCTCTTGTCCTTCTTTTAACGCATCTGGACTCCTGCAAGCAAA
ATCTAAACCTGCCAGTCCCTCATGATATACAGCAAATCTGAATTATTCTG
TAGGGAAAACTAAGACTGGGGTTTACTTTCCTTGTCTCTCCACCTCATGG
GAAGCAGGCTAATTTATTAGGGTTAGGATTTATTATTAATTTATTAGGAT
TGCTATGAAGAGCGGAGAGGCAGAACAAATTTTAAAAAACAAAAGCTACC
CAGATTTTCAGTGTAAAGTTTGGGTCTCCTCTATGAGATTTTTGATGGAG
GCAGATAAACAAGAAGCAGGGAATACCCTTACGAGTTGAAATATTCTTAA
TGAATAGCAATTCAGGGGAGATAAAGGCCAAGAGCCTGTGAGGCCCTGAA
TCAAGTTTCCTTTTTGAAACTCCTAAACACAACGACAATGTTTAAAATGG
GTAATGCCTTCCGAAAGGAACCCAAATGGTAAACAGGGTGATTTTATCCC
TGGATCCCTCCTTTCTAAAAAACCTAAACCTGGGGGGAGTGGAAACTGAA
CGTCCCAATTATATTCACATTATTAAATATCTTCTTGCCCCTCCTCCTTG
TTTTTTCAATAAAAAAATAAATTTCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_p21.g1 MSMg01no449_p21.g1 CHROMAT_FILE:
MSMg01no449_p21.g1 PHD_FILE: MSMg01no449_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:45 2005
         (397 letters)



>mm_chr8_58820786_58821582
          Length = 797

 Score =  752 bits (389), Expect = 0.0
 Identities = 395/397 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtctcagtatccttcaagttgtagcttacaaggacactggacattaagctgttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtctcagtatccttcaagttgtagcttacaaggacactggacattaagctgttcctt 260

                                                                       
Query: 61  tctgttttgtgtcactctcttgtccttcttttaacgcatctggactcctgcaagcaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgttttgtgtcactctcttgtccttcttttaacgcatctggactcctgcaagcaaaat 320

                                                                       
Query: 121 ctaaacctgccagtccctcatgatatacagcaaatctgaattattctgtagggaaaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaacctgccagtccctcatgatatacagcaaatctgaattattctgtagggaaaacta 380

                                                                       
Query: 181 agactggggtttactttccttgtctctccacctcatgggaagcaggctaatttattaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 agactggggtttactttccttgtctctccacctcatgggaagcaggctaatttattagga 440

                                                                       
Query: 241 ttaggatttattattaatttattaggattgctatgaagagcggagaggcagaacaaattt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttaggatttattattaatttattaggattgctatgaagagcggagaggcagaacaatttt 500

                                                                       
Query: 301 taaaaaacaaaagctacccagattttcagtgtaaagtttgggtctcctctatgagatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaaacaaaagctacccagattttcagtgtaaagtttgggtctcctctatgagatttt 560

                                                
Query: 361 tgatggaggcagataaacaagaagcagggaataccct 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatggaggcagataaacaagaagcagggaataccct 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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