BAC Information

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BAC

Clone NameMSMg01-450A22
Chromosome8 (Build37)
Map Location 130,445,208 - 130,555,546
singlet/doubletdoublet
Overlap genenone
Upstream geneTomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
Downstream geneNrp1, LOC668494, Itgb1, LOC100042659, LOC100042667, Ccdc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450A22.T7 (MSMg01no450_a22.b1)MSMg01-450A22.TJ (MSMg01no450_a22.g1)
ACCAG537879AG537880
length776813
length of high quality
(start - end)
515 (69 - 583)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no450_a22.b1 PHD_FILE: MSMg01no450_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:51 2005CHROMAT_FILE: MSMg01no450_a22.g1 PHD_FILE: MSMg01no450_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,555,032 - 130,555,546)(130,445,208 - 130,445,456)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGTTTCATACCGATGAAAGGGGTCAATTAGACTCCTTTCCTTCCATA
TGTCCCCACAATTGCCTTGCCTTTCAGTACCACCTCAATTATGGGTTGAC
TTCTTTCATGACTGAAAGTTTGGGAAAGGCCTGGACTTGAAGAGCACATT
CAGGAACCAGAGTAAGCGGCAGTCCTTCTTTCTGGCCCTTGTGACCTCAT
CTCCAGACAGACTGTGGGAAAGGAACATCTAAGACGTGCAAAGCACTACA
TTCAACTTCAGAACCGCTGTTCTTGCTGGAGGGAGACACCAGTGTGCGTG
GGTACAGAATAAAACCTCACGGAGCAGTTTTATTAGACATCCTCTACTGA
GCTAATAGACGGAAATACGGAGAAAGAAGGGCATTCTGAAAAGACAGCTT
TCATCACATCACGGAGATTCCTTTAGCGGTACTTCAAAGGGAAGAAGTTT
GCAGTCCAGATTGCGGTAACAGCGCTTCGCCCCCAGGATGGTTAGCTGGA
AACACGTTCCTACCCGCCACAAAGTGACTAAATCTAATAACAGGTTCTCC
AGTGACGCTCCTCCCCTGAACAGATTCAACTGAAACCCTGCTTCTGCGCA
CTACATTCACTATTAACAACTTGTAATAGCGACAGCGCATTGCGCATGCC
CGTCCCTCTTGTACCCGTGGACATTGCTCATTCCCAGNTCCTTCCTTGCT
ATTTCTCCGGGTTATCTTCTCCCCTG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGGAATTGTGTGAGACACGGA
AGATGAAAAGCCTAGATATATTAAAGTGAAAGTATAAGCAAAAGTCATAC
TTCCCAGGGCAAAGTAGTCCCAATAACCATGTGGCTCCAAGCTCCCAGTT
CTCCAGACTAGGGGCTTTTAATACAAAGGAAAGGAGAGTTTTCTGAAATG
AGTGGACCTTTTTAATATGGGTGTTTGACATTTCTGCATTCCTTAACCTT
GCGTTTACTGTATGAGGTGATTTATATTTTGATGGCTCCCATGAGCTAAT
AAAGTTGAATGCTTAATCACCAAGGAACAGATGGAACTCTTTGGAGAGTT
CGAGGAAGATTAGGAGATGCGGTCTTATTGGAGACTAGCAGCGTTCTTGT
CGTGTCCACAGGCTCAGTGCTTCTTTTCTGCTGCCTACAGATTCTGATGT
ATAATTCGTCGCTATTTTCTCCGGTGTCCTATTTGTCTGTTTTGTTATCA
TGCTCCTCTTATCCGTTTTACTCGTTTTTCCCTTCCGAAATTGTCTCCTC
TCTCCCCCCACTGTCTAGCCTTTTTTTTTTCCCCCTTTTTCCTAACACCT
GTTGTCCTCTTCTGTTCCCCTTTCATCTTCCTTTTTTATTTTATTTCCTT
TCATCCTCCCCCCCCCTTCCTTATTTTCCCTCTCTCTCTTCACCCCTTTT
TTTTCCTCTCGCGCCCCTCTTTCCTTTCTCCTCTCTTTTTACTCCTTTCC
CCTCTTTTGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_a22.b1 MSMg01no450_a22.b1 CHROMAT_FILE:
MSMg01no450_a22.b1 PHD_FILE: MSMg01no450_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:51 2005
         (515 letters)



>mm_chr8_130554832_130555746
          Length = 915

 Score =  973 bits (503), Expect = 0.0
 Identities = 512/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggggtcaattagactcctttccttccatatgtccccacaattgccttgcctttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aaaggggtcaattagactcctttccttccatatgtccccacaattgccttgcctttcagt 656

                                                                       
Query: 61  accacctcaattatgggttgacttctttcatgactgaaagtttgggaaaggcctggactt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 655 accacctcaattatgggttgacttctttcatgactgaaagtttgggaaaggcctggacct 596

                                                                       
Query: 121 gaagagcacattcaggaaccagagtaagcggcagtccttctttctggcccttgtgacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaagagcacattcaggaaccagagtaagcggcagtccttctttctggcccttgtgacctc 536

                                                                       
Query: 181 atctccagacagactgtgggaaaggaacatctaagacgtgcaaagcactacattcaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atctccagacagactgtgggaaaggaacatctaagacgtgcaaagcactacattcaactt 476

                                                                       
Query: 241 cagaaccgctgttcttgctggagggagacaccagtgtgcgtgggtacagaataaaacctc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cagaaccgctgtccttgctggagggagacaccagtgtgcgtgggtacagaataaaacctc 416

                                                                       
Query: 301 acggagcagttttattagacatcctctactgagctaatagacggaaatacggagaaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acggagcagttttattagacatcctctactgagctaatagacggaaatacggagaaagaa 356

                                                                       
Query: 361 gggcattctgaaaagacagctttcatcacatcacggagattcctttagcggtacttcaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gggcattctgaaaagacagctttcatcacatcacggagattcctttagcggtacttcaaa 296

                                                                       
Query: 421 gggaagaagtttgcagtccagattgcggtaacagcgcttcgcccccaggatggttagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gggaagaagtttgcagtccagattgcggtaacagcgcttcgcccccaggatggttagctg 236

                                              
Query: 481 gaaacacgttcctacccgccacaaagtgactaaat 515
           |||||||||||||||||||||||| ||||||||||
Sbjct: 235 gaaacacgttcctacccgccacaacgtgactaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no450_a22.g1 MSMg01no450_a22.g1 CHROMAT_FILE:
MSMg01no450_a22.g1 PHD_FILE: MSMg01no450_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:51 2005
         (249 letters)



>mm_chr8_130445008_130445656
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagggaattgtgtgagacacggaagatgaaaagcctagatatattaaagtgaaagtat 60
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 201 tgcagggaattgtgtgagacacggaagatgaaaaccctagatgtattaaagtgaaagtat 260

                                                                       
Query: 61  aagcaaaagtcatacttcccagggcaaagtagtcccaataaccatgtggctccaagctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaaaagtcatacttcccagggcaaagtagtcccaataaccatgtggctccaagctcc 320

                                                                       
Query: 121 cagttctccagactaggggcttttaatacaaaggaaaggagagttttctgaaatgagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttctccagactaggggcttttaatacaaaggaaaggagagttttctgaaatgagtgg 380

                                                                       
Query: 181 acctttttaatatgggtgtttgacatttctgcattccttaaccttgcgtttactgtatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctttttaatatgggtgtttgacatttctgcattccttaaccttgcgtttactgtatga 440

                    
Query: 241 ggtgattta 249
           |||||||||
Sbjct: 441 ggtgattta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)