BAC Information

Click to search

BAC

Clone NameMSMg01-450F08
Chromosome8 (Build37)
Map Location 35,644,695 - 35,813,474
singlet/doubletdoublet
Overlap genenone
Upstream geneTex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746
Downstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F08.T7 (MSMg01no450_f08.b1)MSMg01-450F08.TJ (MSMg01no450_f08.g1)
ACCAG538088AG538089
length758758
length of high quality
(start - end)
302 (330 - 631)244 (75 - 318)
definitionCHROMAT_FILE: MSMg01no450_f08.b1 PHD_FILE: MSMg01no450_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:13 2005CHROMAT_FILE: MSMg01no450_f08.g1 PHD_FILE: MSMg01no450_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,644,695 - 35,644,996)(35,813,231 - 35,813,474)
sequence
NGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGAACAGGAGCCG
CGGAATTCCAGTTTTTCCTGAATTGGGAAGNAAGCAGGTGTCATTTTTGT
GATAGACAGTTTGGTAGAGGTTATCACTATTTAACATGAATGCATTCTTT
CATATGTCAAATTCACTTGGAAGCATTTATGCAGAGAGTAGACATGATAT
TTATAAAGAACCAAGCAAGCCATTCACGGCAGCATTATGGGATCTGACAG
CAGAATACTAGACCCAGATTAAATTCCTATCATATGGGAAGGAAAAGAAA
AGCCGTAACACATCCATCCTTTTTTATTAATGTGTTATAGACTGTAGTGC
CATAGGTAGAGGGTATGAGCTGGGCATCTGCTCTGCTGCAGATGGATCAT
CAACATTTATTGTAATTTGAAAATTAAGAATTGCAGAGTAACAGACCTAG
TTTGGTTTTATTTAAAGAGTACATGCAAAAAAAAAATCATGTCTCTATGT
GTTTGTGCTCTCACAGATTTAGAAAAAAACAAGCAACCATTTTTAAAAAG
TGCCCATCTCTGGTAAGAAAGGGATGCGTTCTGATGAGCTGAGGAGAGGC
TGTCTCCTGCCAGTCTGTTCTCCCATCCTGTCAACAGGTCAGGGTTGAAG
GCTTGGGTATTTAACCCACTGCAATACATTCCTGAAGTGGAATTGCTGTG
GTTCCGGGCAGAAAGAAACCTTCCTTATTCCAAAATGTAACCTAGACCCC
ATCCCCTN
NCGCGATGAAGTGNTAGGCCTGGCGGCCGCCTGTTTCAAAACATGAGGTG
ACCTATAGAAGTTTCAGCGAAAATCTCCGGCTCCGGGCTTCTCATCCTTT
CTCCTGGTGCCTAACTATCTCCTTCAACTGTTCCCAGGTGGAGTTCTGAT
GGTTTCATTTTCTCCTCTCTCTAGCTGCCTCACCCACTTAGGTGAGCACT
TCCTTTCTTTGTGAGACATAGTTCAATTGATGGAATATCTTTAATGGCGA
ATATCTTTAAGTGCTCCTGCTGGCCAGGAGCACTGGAAGGTGTCTTAATT
AGCGTTTGTTGAATGGAGTTCTATTCGCAGGCAGGATTTGTATATGCGCT
CTCTCAATGTTCTCAGAACAGACCACAACAGAAATAAAACTTGTACCTGA
ACAACTCTTCCATTCTCATTTCTGTGAGCAGCTCCAGCTGAGCTGACTGG
CCACTTGATCTGACGGCTCACTTTGGAACGCAGGAAAAGCCATCTGCCCT
GGATATATTTGTACTTACAGTATTGTTTTGGGGCCAAGCTTCATGCTCAA
AATTCTCCAGGGGTTACTTTCATGGTCTGGCAACTAAACGTTTACTTTTC
TCTTCCTAGAACAATAAATAAGCGCACACTGAAATGTTTATACGAAGGAG
ACGGCGCATATTTCGTTAAACTACAGGAGATAAGCTTGGAGTCTTAGTCC
TTCAAGTACAAATGACAACGCGTGGCAGCCAGAGAGCTTGGCCCCTCTTT
TGGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f08.b1 MSMg01no450_f08.b1 CHROMAT_FILE:
MSMg01no450_f08.b1 PHD_FILE: MSMg01no450_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:13 2005
         (302 letters)



>mm_chr8_35644495_35645196
          Length = 702

 Score =  576 bits (298), Expect = e-169
 Identities = 301/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgttatagactgtagtgccataggtagagggtatgagctgggcatctgctctgctgc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 atgtgttatagactgtagtgccataggtagagggcatgagctgggcatctgctctgctgc 260

                                                                       
Query: 61  agatggatcatcaacatttattgtaatttgaaaattaagaattgcagagtaacagaccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatggatcatcaacatttattgtaatttgaaaattaagaattgcagagtaacagaccta 320

                                                                       
Query: 121 gtttggttttatttaaagagtacatgcaaaaaaaaaatcatgtctctatgtgtttgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttggttttatttaaagagtacatgcaaaaaaaaaatcatgtctctatgtgtttgtgct 380

                                                                       
Query: 181 ctcacagatttagaaaaaaacaagcaaccatttttaaaaagtgcccatctctggtaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcacagatttagaaaaaaacaagcaaccatttttaaaaagtgcccatctctggtaagaa 440

                                                                       
Query: 241 agggatgcgttctgatgagctgaggagaggctgtctcctgccagtctgttctcccatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggatgcgttctgatgagctgaggagaggctgtctcctgccagtctgttctcccatcct 500

             
Query: 301 gt 302
           ||
Sbjct: 501 gt 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no450_f08.g1 MSMg01no450_f08.g1 CHROMAT_FILE:
MSMg01no450_f08.g1 PHD_FILE: MSMg01no450_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:13 2005
         (244 letters)



>mm_chr8_35813031_35813674
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccggctccgggcttctcatcctttctcctggtgcctaactatctccttcaactgttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctccggctccgggcttctcatcctttctcctggtgcctaactatctccttcaactgttcc 385

                                                                       
Query: 61  caggtggagttctgatggtttcattttctcctctctctagctgcctcacccacttaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caggtggagttctgatggtttcattttctcctctctctagctgcctcacccacttaggtg 325

                                                                       
Query: 121 agcacttcctttctttgtgagacatagttcaattgatggaatatctttaatggcgaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcacttcctttctttgtgagacatagttcaattgatggaatatctttaatggcgaatat 265

                                                                       
Query: 181 ctttaagtgctcctgctggccaggagcactggaaggtgtcttaattagcgtttgttgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttaagtgctcctgctggccaggagcactggaaggtgtcttaattagcgtttgttgaat 205

               
Query: 241 ggag 244
           ||||
Sbjct: 204 ggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)