BAC Information

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BAC

Clone NameMSMg01-450P11
Chromosome8 (Build37)
Map Location 93,631,625 - 93,632,063
singlet/doubletsinglet
Overlap geneRbl2
Upstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
Downstream geneAktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450P11.T7 (MSMg01no450_p11.b1)MSMg01-450P11.TJ (MSMg01no450_p11.g1)
ACCAG538567AG538568
length781794
length of high quality
(start - end)		439 (76 - 514)410 (80 - 489)
definitionCHROMAT_FILE: MSMg01no450_p11.b1 PHD_FILE: MSMg01no450_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:03 2005CHROMAT_FILE: MSMg01no450_p11.g1 PHD_FILE: MSMg01no450_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTACTCACCTAGAGGTCCAGTATCATGAAGTGTTTCCATGT
CTTCTGCATTTCATAGCTGCAGACTAACTGTGAGTCCTCTTTACATGTGG
TATGAGATTCAAGTCCAGCTTCACGCTTTGTGTTGTTTTCTGGCTGCCAC
ACCGTTACTTAAGCCATGTTTCCCCACTGAATAAACGTTGCATGTTTGTG
GAGTCAGTTCTTGTGGACCTGTGGGTTCTATCGAGACCATCTCTTTGATT
ATGTTCATCTGTGTCTCTCTTATTTAGTGCTTTATACTCTCAATGACTCT
TGCTTTTTTTGTAAACTTTGAAATTGGGAAATATGAGTCCTAATTTTATT
TTACTTTAGATTATTTTAGCTATTCTGAGTCCCTTGGAAGTCCATAAAAA
TTTTAGAGTCAAGTTGTCACTGTCATAAAAGAGTCACATGAAAATCTACA
GATCACTTTGGGGAACTCGGTCATCTTCAGTTCCGTCTTCATTCCCCATG
GCATGCTTTCACATTTGCCTAGGTTCAGTTTTAACAATGATTCCTGGCTT
TCTAATTGTATCTTTCACCCCTGGTTATTTTTTCTGGAAGTTTTGGAGGC
TACTTTTACTACTTCCTTTCTTTCCCCCTTCTACCTCCCCCTCATTTTCT
TACACCATCCTTTCCTCTTCCTCTTTTCCCTCCCTTTCTTTCACATTTTT
TAATCTATCTCCAATTTCTCCCCTCTCCCCG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCTAAAATCTTCATCTGA
CCCTGGGCTTGTTTTGTTGGGAGACTTAATTACTGCCTCTATTTCACTAG
GGGCTATAAGTCTATTGAAATTGCTTATCTGATGTTGAGTTAACTTTGTA
AGTGGTGTGTATCAAGAAAATTACCCATTTCTTTTAGATTTTCCAATTTG
GTATAGTTTTTTTTTAAGTATGTTCTAATGATTCTCTGGATTTCATCTGT
GTCTGTTGTTAAATCTACCTTTCCATGTCTAATTTTGTAAGCTTGGATAT
TCTCTTTCTGTCTTTTAATTTGTATAAAAGTTTGTCAAAGAAACAAATCT
TTGCTTCATTGATTCTTTGTATGTTTTAACTCTATTTTATTAACTTCAGC
CCTGATTTATTTATTTATTTTTGTCTGTCTACTCCTTTTTTGGTATGTTT
ATTTTTTCTCTTCTACACCTTTCATATGCGTCTTTTACCCTATCTTGATG
AAATTTGATTTTTGTCTCCCCCCTTGTTCTCCCTACTCCTTTTTCACGTT
CTTTTTTTTTTTCTCTTTTTTCTCTGTATTTTTCCTTTTCTTCTTCCTTT
TTTTTCCTTCTCCCTTTCTTTCTTTTTTTTTCCCCTTTGTTTTTCCTCTT
TCTCCTTTTTTCTCTCTTTTGTTTTTTCCTTTCCCCTCTCTTTTTCTGCC
TTATTCCCTTTTCCTTTTTATTGTTCTCTTCCTTCTTTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_p11.b1 MSMg01no450_p11.b1 CHROMAT_FILE:
MSMg01no450_p11.b1 PHD_FILE: MSMg01no450_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:03 2005
         (439 letters)



>mm_chr8_93631425_93632263
          Length = 839

 Score =  833 bits (431), Expect = 0.0
 Identities = 437/439 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtatcatgaagtgtttccatgtcttctgcatttcatagctgcagactaactgtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtatcatgaagtgtttccatgtcttctgcatttcatagctgcagactaactgtgagt 260

                                                                       
Query: 61  cctctttacatgtggtatgagattcaagtccagcttcacgctttgtgttgttttctggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctttacatgtggtatgagattcaagtccagcttcacgctttgtgttgttttctggct 320

                                                                       
Query: 121 gccacaccgttacttaagccatgtttccccactgaataaacgttgcatgtttgtggagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccacaccgttacttaagccatgtttccccactgaataaacgttgcatgtttgtggagtc 380

                                                                       
Query: 181 agttcttgtggacctgtgggttctatcgagaccatctctttgattatgttcatctgtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttcttgtggacctgtgggttctatcgagaccatctctttgattatgttcatctgtgtc 440

                                                                       
Query: 241 tctcttatttagtgctttatactctcaatgactcttgctttttttgtaaactttgaaatt 300
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcatagttagtgctttatactctcaatgactcttgctttttttgtaaactttgaaatt 500

                                                                       
Query: 301 gggaaatatgagtcctaattttattttactttagattattttagctattctgagtccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaaatatgagtcctaattttattttactttagattattttagctattctgagtccctt 560

                                                                       
Query: 361 ggaagtccataaaaattttagagtcaagttgtcactgtcataaaagagtcacatgaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaagtccataaaaattttagagtcaagttgtcactgtcataaaagagtcacatgaaaat 620

                              
Query: 421 ctacagatcactttgggga 439
           |||||||||||||||||||
Sbjct: 621 ctacagatcactttgggga 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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