BAC Information

Click to search

BAC

Clone NameMSMg01-451G11
Chromosome8 (Build37)
Map Location 89,267,901 - 89,268,516
singlet/doubletsinglet
Overlap geneSiah1a, ENSMUSG00000074178
Upstream geneItfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12, Lonp2
Downstream geneBC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik, Zfp423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G11.T7 (MSMg01no451_g11.b1)MSMg01-451G11.TJ (MSMg01no451_g11.g1)
ACCAG538901AG538902
length723724
length of high quality
(start - end)
241 (326 - 566)615 (85 - 699)
definitionCHROMAT_FILE: MSMg01no451_g11.b1 PHD_FILE: MSMg01no451_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:38 2005CHROMAT_FILE: MSMg01no451_g11.g1 PHD_FILE: MSMg01no451_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGGAGGAGCGAAAATTGCGGGCGCGAAACGACTCACTTCAGAGGAGAAG
CCGCGGAATTCAGTTTCTAGATACAGGCGGGAAAGAACCAACTCCACAGA
GCTATGCCCTGCCCTACTCACACACACACACACACACACACACACACACA
CACACACCATATGCAGACAAAATAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATATTTTAAATGCCAT
ATTGGGAACCAGCTGTGGCGGCGCACACCAGTAACCCCCAGCACTTGGCA
ATAAGCATCATGATTTTTTTTTTATCATCATGAGTTAGAGGCCAGCCTAA
GCTATGCAGAGAGTTCCTATCTCAAAAATAACTACTACAGGACTGGGGAG
ATGGCTCAGTGGGTAAGAGCATTGACTGCTCTTCCGAAGGTCCTGAGTTC
AAATCCCAGCAACCACATGGTGGCTCACAACCACCCATAATGAGATCTGA
TACCCTCTTCTGGTGCGTCAGAATTCAGCTACAGTGTATTTATGTATTAT
AATATATAATAAATAAATCTTTGGGCAGGAGCAATCAAGGTCTGAGTGAG
CGGGACGGACCAGAGAATGCACAGGTCCTAAAAATTGAATTCTCATCTCC
CACATGAAGGCTCACAACCATCTGTACAGTTACAGTGTATTCATACACTT
ATAATATATATATAAATCCTTAN
TTTTTTTCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCAACTAATATGA
GTTCAGGTTTCTACCACCAAGTTCAGCTTTCTGATGTAGGAATTTCCTCC
AAGGTTTAAGGGAGCAGATAGTCTGAAGCAAAATAAATTACTTATGTTTC
TAAATGTAATCTTTTCTTTCTTTTTTTAACTATCCAGTCAAATTTGTTAC
ACTGTTTCAGTTTTAAATACTGTTACAAAACTAGTGCAAACATGCGGGGG
GGGGGGGGTCTTGAACCAATTCACAAATAATAAAGTTAAAGCCCACTTTA
AGTAAAAAGCTCTGGACAAAACTGAGACTAAAGACTACAAGTTGTATTGT
TATTTAAATTTCTAAAAACAAACAAACAAACAAAAAGTATGGTTAATTTA
TGGAACCCACTTTTGGAAAATCTTCCTCTACCAGTCAGTCACCAGTCACA
AACTTATCCCAAAGGTAAACACATTTCCCACCACGTGAGCGCTCCGCTCC
GAGACAGTTACTATGCCATCTCATTTGTCACAGCAGGCTTTGCTCTTCAG
CAGCTTCTGAAGGAGACGGTGACACCACAGGTAACGACACTAATTAAAGG
GAGTCACTGTCCTACTTTTCCAAGTTAGGTAATTGAAGTCCTTGAAAGTG
AACTGATCCATAAACTAAACCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g11.g1 MSMg01no451_g11.g1 CHROMAT_FILE:
MSMg01no451_g11.g1 PHD_FILE: MSMg01no451_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:38 2005
         (615 letters)



>mm_chr8_89267701_89268716
          Length = 1016

 Score = 1176 bits (608), Expect = 0.0
 Identities = 614/616 (99%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtcaactaatatgagttcaggtttctaccaccaagttcagctttctgatgtaggaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtcaactaatatgagttcaggtttctaccaccaagttcagctttctgatgtaggaatt 260

                                                                       
Query: 61  tcctccaaggtttaagggagcagatagtctgaagcaaaataaattacttatgtttctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctccaaggtttaagggagcagatagtctgaagcaaaataaattacttatgtttctaaa 320

                                                                       
Query: 121 tgtaatcttttctttctttttttaactatccagtcaaatttgttacactgtttcagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaatcttttctttctttttttaactatccagtcaaatttgttacactgtttcagtttt 380

                                                                       
Query: 181 aaatactgttacaaaactagtgcaaacatgcggggggggggggg-tcttgaaccaattca 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaatactgttacaaaactagtgcaaacatgcggggggggggggggtcttgaaccaattca 440

                                                                       
Query: 240 caaataataaagttaaagcccactttaagtaaaaagctctggacaaaactgagactaaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaataataaagttaaagcccactttaagtaaaaagctctggacaaaactgagactaaag 500

                                                                       
Query: 300 actacaagttgtattgttatttaaatttctaaaaacaaacaaacaaacaaaaagtatggt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actacaagttgtattgttatttaaatttctaaaaacaaacaaacaaacaaaaagtatggt 560

                                                                       
Query: 360 taatttatggaacccacttttggaaaatcttcctctaccagtcagtcaccagtcacaaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatttatggaacccacttttggaaaatcttcctctaccagtcagtcaccagtcacaaac 620

                                                                       
Query: 420 ttatcccaaaggtaaacacatttcccaccacgtgagcgctccgctccgagacagttacta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcccaaaggtaaacacatttcccaccacgtgagcgctccgctccgagacagttacta 680

                                                                       
Query: 480 tgccatctcatttgtcacagcaggctttgctcttcagcagcttctgaaggagacggtgac 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccatctcatttgtcacagcaggctttgctcttcagcagcttctgaaggagacggtgac 740

                                                                       
Query: 540 accacaggtaacgacactaattaaagggagtcactgtcctacttttccaagttaggtaat 599
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accacaggtaacaacactaattaaagggagtcactgtcctacttttccaagttaggtaat 800

                           
Query: 600 tgaagtccttgaaagt 615
           ||||||||||||||||
Sbjct: 801 tgaagtccttgaaagt 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space:   608630
Effective search space used:   608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)