Query= MSMg01no451_g12.b1 MSMg01no451_g12.b1 CHROMAT_FILE:
MSMg01no451_g12.b1 PHD_FILE: MSMg01no451_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:38 2005
(656 letters)
>mm_chr8_49167058_49168110
Length = 1053
Score = 1021 bits (528), Expect = 0.0
Identities = 559/570 (98%), Gaps = 3/570 (0%)
Strand = Plus / Minus
Query: 1 aaagactatgggctgccaatcgcagcaagggtcatctatctggcagatgctccacttaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaagactatgggctgccaatcgcagcaagggtcatctatctggcagatgctccacttaag 640
Query: 61 aagtgtgagcctgctcttgcatgatcctcagctcttcccaagactcaagaaaaactggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagtgtgagcctgctcttgcatgatcctcagctcttcccaagactcaagaaaaactggct 580
Query: 121 ttgctaccatctttactgtgcaggaagaaaactgagatagactccacatggaaggcggag 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttgctaccgtctttactctgcaggaagaaaactgagatagactccacatggaaggcggag 520
Query: 181 ggacagaaataaagagaggaggaactctgggagaaatgcagcaggccaaatgagaggatg 240
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggacagaaat--agaga-gaggaactctgggagaaatgcagcaggccaaatgagaggatg 463
Query: 241 aaagccccctccccagagaaagaaaggaaacagttagctgccacaatccctatactgtgc 300
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agagtctcctccccagagaaagaaaggaaacagttagctgccacaatccctatactgtgc 403
Query: 301 tccacaggccagttcctcaccctgtctaaccttagactttgagctgcttaagtgtgtaag 360
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 402 tccacaggccagttcctcaccctgtctaacctttgcctttgagctgcttaagtgtgtaag 343
Query: 361 agtttagacattatacatgctacaaaccaattctgtctgtcaagtctaaggtttccaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agtttagacattatacatgctacaaaccaattctgtctgtcaagtctaaggtttccaaaa 283
Query: 421 agagagacttgcctcttgtctttctttatctctagaaaatttctttaatgtattctatga 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 282 agagagacttgcctcttgtctttctttatctctagaaattttctttaatgtattctatga 223
Query: 481 tttttaaataacgatctagtacgtggcagcaaatggttggagtcctagcattttggatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tttttaaataacgatctagtacgtggcagcaaatggttggagtcctagcattttggatat 163
Query: 541 ggagacaagaggattaaaaatttgaggctc 570
||||||||||||||||||||||||||||||
Sbjct: 162 ggagacaagaggattaaaaatttgaggctc 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1053
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1043
Effective search space: 673778
Effective search space used: 673778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_g12.g1 MSMg01no451_g12.g1 CHROMAT_FILE:
MSMg01no451_g12.g1 PHD_FILE: MSMg01no451_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:38 2005
(622 letters)
>mm_chr8_49043396_49044417
Length = 1022
Score = 1187 bits (614), Expect = 0.0
Identities = 621/624 (99%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 agtctgtaaatcaggctggcctcaaactcacagggatcctgcagctgctgcctctagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agtctgtaaatcaggctggcctcaaactcacagggatcctgcagctgctgcctctagatg 258
Query: 61 gttagaggcaaatgctactaccatctagccatcttggagcttttcaagactgccatatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gttagaggcaaatgctactaccatctagccatcttggagcttttcaagactgccatatat 318
Query: 121 actgaattgtaccctatggagtcagagtgtggtcctccacttaagccgggcatcctaaat 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 actgaattgtaccctatggagtcagagtgtggtcctccacttaggccgggcatcctaaat 378
Query: 181 aggggaaggagagctggtgacaaaagttgcaaaagcctgagtgaaatactgcatcagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggggaaggagagctggtgacaaaagttgcaaaagcctgagtgaaatactgcatcagcat 438
Query: 241 gtgtcctccaaaagaccactgcacataaagagtaatgtagctacagtgttaaattcttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgtcctccaaaagaccactgcacataaagagtaatgtagctacagtgttaaattcttat 498
Query: 301 ggagaggaacaggcaattggggacggcatatctgaaaggactcagggctcaggaatacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggagaggaacaggcaattggggacggcatatctgaaaggactcagggctcaggaatacag 558
Query: 361 cagaatgcagaga--ttcatccccttactgcatacattagtaatttgttcctatttccta 418
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagaatgcagagagattcatccccttactgcatacattagtaatttgttcctatttccta 618
Query: 419 ttgagcagtgttttgtggtgggaatgcccgcttgtttgaaaggggtacgttgcagttctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgagcagtgttttgtggtgggaatgcccgcttgtttgaaaggggtacgttgcagttctc 678
Query: 479 tcaaagcctgcagcggaatgctggcctgaacagtaaaggtgtattacatccctgctgaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcaaagcctgcagcggaatgctggcctgaacagtaaaggtgtattacatccctgctgaca 738
Query: 539 gagctgtcactctgttggggcttccggtttctccctatctagggagcatactacatcatc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gagctgtcactctgttggggcttccggtttctccctatctagggagcatactacatcatc 798
Query: 599 aggacttcgttttgttcattttca 622
||||||||||||||||||||||||
Sbjct: 799 aggacttcgttttgttcattttca 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
