Query= MSMg01no451_j23.b1 MSMg01no451_j23.b1 CHROMAT_FILE:
MSMg01no451_j23.b1 PHD_FILE: MSMg01no451_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:56 2005
(658 letters)
>mm_chr8_90349845_90350902
Length = 1058
Score = 1183 bits (612), Expect = 0.0
Identities = 645/656 (98%)
Strand = Plus / Minus
Query: 1 gagaatccgaggttcagcaagctcaaggtaactcaggaatataatagggcccagaggcaa 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 856 gagaatccgaggttcagcaagctcaaggtaacttgggaatataatagggcccagaggcaa 797
Query: 61 acttatatttgtttgaccacagcccaagttcttggtcataacttgttctgagtgtcaaca 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 acttatatatgtttgaccacagcccaagttcttggtcataacttgttctgagtgtcaaca 737
Query: 121 cagccattcaagtcccacaggtgactgcttttccaaaggcagctagaagtgccacagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cagccattcaagtcccacaggtgactgcttttccaaaggcagctagaagtgccacagata 677
Query: 181 gattatcaggaggactggggcccagtagactgaagagaatcatctgtgcacactggcgtt 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 676 gattatcaggaggactggggcccaatagactgaagagaatcatctgtgcacactggcgct 617
Query: 241 gcgtctttctttccattctccgtctggctttgtgggctgtgctgactccattctgttgga 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgtctttctttccattctccgtctggctttgtgggctgtgctgactccattctgttgga 557
Query: 301 ccctctgccgtaggtctagccaagttcttcccagctagagaacagctcccatctggtgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccctctgccgtaggtctagccaagttcttcccagctagagaacagctcccatctggtgac 497
Query: 361 cagaaacctggaggaaccggccacgatcctgcctctgggaagaaaatgatcaatgactct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cagaaacctggaggaaccggccacgatcctgcctctgggaagaaaatgatcaatgactct 437
Query: 421 tatctcagcctatgcttgggctagagctcattgctaaggagggcgtcccccctgctcttg 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 436 tatctcagcctatgcttgggctagagctcattgctaaggagggcgtccctcctgctcttg 377
Query: 481 gccttccccaggccctagtctggcttgctacctcaacctctgcctactgtgctccacagg 540
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 376 gccttccccaggccctagtctggcttgctaccccatcctctgcctactgtgctccacagg 317
Query: 541 ggcccatgcctccttgttttgaggtttccgtcttcgttctgttcccctctggccccgtgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcccatgcctccttgttttgaggtttccgtcttcgttctgttcccctctggccccgtgc 257
Query: 601 cagctgtgactgccttgttgggttctgtcaggttgttcggctttcagcacacactg 656
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 cagctgtgactgtcttgttgggttctgtcaggttgtttggctttcagcacacactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_j23.g1 MSMg01no451_j23.g1 CHROMAT_FILE:
MSMg01no451_j23.g1 PHD_FILE: MSMg01no451_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:56 2005
(504 letters)
>mm_chr8_90160149_90161052
Length = 904
Score = 909 bits (470), Expect = 0.0
Identities = 494/502 (98%), Gaps = 2/502 (0%)
Strand = Plus / Plus
Query: 1 tatgcaggccatagcaaattatttactgaacacccaaatattctcatgtcccaaatgcag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tatgcaggccatagcaaattatttactgaacacccaaatattctcacgtcccaaatgcag 260
Query: 61 caagcgtgaaagggctgggggtggggtgagcgctggtaaaggaaagtgttacagacagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcgtgaaagggctgggggtggggtgagcgctggtaaaggaaagtgttacagacagcc 320
Query: 121 atgaactgagcctggaaggatggaggagtcattccacaagagggtgggggcattgggaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 atgaactgagcctggaaggatggaggagtcattccacaagagggtgggggcatcgggaca 380
Query: 181 tcagcaaacacacagagatgaaagcgtagatgtccaagtgatctggctgtgaaatctgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcaaacacacagagatgaaagcgtagatgtccaagtgatctggctgtgaaatctgtc 440
Query: 241 acagcgctgagtggcagggttggtttggctgatctcgttcggctaggtgggtgtcccctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagcgctgagtggcagggttggtttggctgatctcgttcggctaggtgggtgtcccctt 500
Query: 301 tctccctcactgctccatgcacgcgcctccagaagctgggtgtgatattgaagaaagcaa 360
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tctccctcactgctccatgcaggcgcctccagaagctgggtgtgatgttgaagaaagcaa 560
Query: 361 cctttcctgaacagaagaactcatcttccatcaaaggtacatggatagctgtgctctctc 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttccctgaacagaagaactcatcttccatcaaaggtacatggatagctgtgctctctc 620
Query: 421 ctgctacagcctccaaacaagttatcaaaaatgcaaaggtattgggtgagtttta-cgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 621 ctgctacagcctccaaacaagttatcaaaaatgcaaaggtattgggtgagttttaac-cc 679
Query: 480 cccccccggggtggggaggggg 501
||||||| ||||||||||||||
Sbjct: 680 ccccccctgggtggggaggggg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
