BAC Information

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BAC

Clone NameMSMg01-451P12
Chromosome8 (Build37)
Map Location 73,404,609 - 73,405,084
singlet/doubletsinglet
Overlap genenone
Upstream geneCilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124
Downstream geneSlc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451P12.T7 (MSMg01no451_p12.b1)MSMg01-451P12.TJ (MSMg01no451_p12.g1)
ACCAG539333AG539334
length743750
length of high quality
(start - end)		689 (49 - 737)578 (74 - 651)
definitionCHROMAT_FILE: MSMg01no451_p12.b1 PHD_FILE: MSMg01no451_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:24 2005CHROMAT_FILE: MSMg01no451_p12.g1 PHD_FILE: MSMg01no451_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAGATCTGCCTGCCTTTGTAAGCACAGAGAGTAAGTTTAGC
TGGGTGGGATCCCGTCCTGAGATTACCATTTCTTTTTTTTTTTTTTTAAG
ATTTATTTATTTTATGTATGTGAGTACACTGTAGCTGACTTCAGACACAC
CAGAAGAGGGCACCAGATCCCATTACAGATACCATCTGTGAGCCACCATG
TGGTTGCTGGGAATTGAACTCAGGACTTCTGGAAGAACAGAGGGTGCTTT
TAACCACTGAGCCATCTCTTCAGCCCAGATTACCATTTCTTAAATCTCTT
TATCTCCTTCCTCAGTTTCTTTTTGACAAGCTGGCTCAGAGTTTAGCTGT
CCCTGTTCTTCTAGATCTGTGAAGGCCCTGACTTATACTGCATCGTTATA
TTTTGCATATTGAGAAATTATATAGTCTTGGACTCATGTTTTCAGAGTTC
TTTCCTACAGCCTTAAGGGCTGTCCTGAAGGTCTCAGCATTTACCATTTT
TCTGAGACATTAGGCACAGCCTCGCCTCATGGACTCATGTTGCTTCTAAT
TATCATTGAGTCATTAATCTTGGCAGGGAGAATATTTCCCAAAGGAGGAA
CATTTTATACACACACACACACACACACACACACACACACACACACACAC
ACACGCCTCATGCCCAGCAACTGTCAGCACTCCTGCAGGCCAA

NCCGATGCAGTGGGAGGCCTGGNGGCCGCCTGTCCGACAAAGGGAGGTGA
ACTATAGATTCCTCAAAGAAGATAATATGTACACAAAGCTGGCCTTGAAC
CCAGAGATCCACCTGCCTCTGGCTCTCCAGTGCTGGGATTAAAACTGTGC
ACCACCACTGTATGACCATCACTTCCCTTATTTCCACCCCCCCCAAAAGT
TGCTCCCTTTTATTTGTATGTATGCAAACACACACCAAAGCAGGACACTG
AGAGGTCAGACAACAGCTTGCAGGAGTTCGTAGTCTCCTCCTACTGTGTA
AGACTGGAGTATTGAACTCACATCCTCAGGCTTGGCAGCAAGCTCCTTTG
CCTATTGAGCCCTCCCTCCGGCCCCTCTTTTCTCTTTCACTCTGGCCTTG
ATTCTTTTTCTTATCTGGATGGTAAACATCACAGCAGCATTAGCTGCCAG
CCAGGATGGCGGCAGCTCTGCTTCACCCAGAATGTGTCATGTCTGTCCTT
CAGTCACCTGACACAGGCAAGCAGCCCTGTTCACTCCCTGGCTTGGAGCA
GCGTAATTTCCCCAGCTCGCCTCTTAGCACAAAGGCTGACATCCGGTGCC
TCAGCACGGTGAGCTGCTCTTCGGGAATGTTTCTGCCTCTCATGTTTGAG
TGATCCAGGCCCTCTGAAGCTCCAGGGTTCTTCTGGGCCCTGGAATGAAA
CCTTGCACACCCCCGGCATTGTGGCCTCCGCATAACAGATGAATTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_p12.g1 MSMg01no451_p12.g1 CHROMAT_FILE:
MSMg01no451_p12.g1 PHD_FILE: MSMg01no451_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:24 2005
         (578 letters)



>mm_chr8_73404107_73405084
          Length = 978

 Score =  913 bits (472), Expect = 0.0
 Identities = 475/476 (99%)
 Strand = Plus / Minus

                                                                       
Query: 103 ccttatttccaccccccccaaaagttgctcccttttatttgtatgtatgcaaacacacac 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 ccttatttccaccccccccaaaagttgctcccttttatttgtatgtatgcaaacacacac 919

                                                                       
Query: 163 caaagcaggacactgagaggtcagacaacagcttgcaggagttcgtagtctcctcctact 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 caaagcaggacactgagaggtcagacaacagcttgcaggagttcgtagtctcctcctact 859

                                                                       
Query: 223 gtgtaagactggagtattgaactcacatcctcaggcttggcagcaagctcctttgcctat 282
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gtgtaagactggaggattgaactcacatcctcaggcttggcagcaagctcctttgcctat 799

                                                                       
Query: 283 tgagccctccctccggcccctcttttctctttcactctggccttgattctttttcttatc 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgagccctccctccggcccctcttttctctttcactctggccttgattctttttcttatc 739

                                                                       
Query: 343 tggatggtaaacatcacagcagcattagctgccagccaggatggcggcagctctgcttca 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tggatggtaaacatcacagcagcattagctgccagccaggatggcggcagctctgcttca 679

                                                                       
Query: 403 cccagaatgtgtcatgtctgtccttcagtcacctgacacaggcaagcagccctgttcact 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cccagaatgtgtcatgtctgtccttcagtcacctgacacaggcaagcagccctgttcact 619

                                                                       
Query: 463 ccctggcttggagcagcgtaatttccccagctcgcctcttagcacaaaggctgacatccg 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccctggcttggagcagcgtaatttccccagctcgcctcttagcacaaaggctgacatccg 559

                                                                   
Query: 523 gtgcctcagcacggtgagctgctcttcgggaatgtttctgcctctcatgtttgagt 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtgcctcagcacggtgagctgctcttcgggaatgtttctgcctctcatgtttgagt 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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