BAC Information

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BAC

Clone NameMSMg01-452H17
Chromosome8 (Build37)
Map Location 68,761,493 - 68,926,877
singlet/doubletdoublet
Overlap geneMarch1
Upstream geneLOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452H17.T7 (MSMg01no452_h17.b1)MSMg01-452H17.TJ (MSMg01no452_h17.g1)
ACCAG539723AG539724
length759756
length of high quality
(start - end)
678 (74 - 751)633 (75 - 707)
definitionCHROMAT_FILE: MSMg01no452_h17.b1 PHD_FILE: MSMg01no452_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:03 2005CHROMAT_FILE: MSMg01no452_h17.g1 PHD_FILE: MSMg01no452_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,761,493 - 68,762,167)(68,926,257 - 68,926,877)
sequence
NACCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGNG
GAATTCTCAACTTTACATGTTCCAGCTCATTAATTATCTCACCAAAAATT
AAAAAATATTATTAAATTTGTATTCTAAACTTTAAATTTCAAATACCATT
GCATTATGTTATTTTAGTACTTCGATGTCCTGTTTTATGCTGTTCAATTC
ATCTTAGAATCTTCTTGATAATTCTAAGATGCTTGTCTCCACTGCTGCAT
CCAATGCTTTCATTTATCTTATTAAACACATTGAACATATGACTTGTCTT
GCAGTGTCAGAATTCAAATCCTCTGCATGCCAAATTTTAGCTGGAGTTTT
ATTTCCTGACTCACCCACAGTGCTTTGTTTGTTTGTGAATTTTAGGTTGT
GAATTTATATATCTTGGAATGTTACCTGTGGGGATTGTTTTGAAGGCTGA
AAGAAGATTTCATCAGAGAGAATTCATATTTGTTTCTGCCAGTATCTTGG
GGGTACTACCAGCTTGGGATCACTTTAAAATAAATTCTCAACTTGAAGCA
TTTTGATCCAGCTATTTAATGTGGATTCAGGCTGCCTACAGTTATAGATT
GTTAGGGAAGAGTACGTTCTCTATCCTAAGCGTCAGCCTTTGTGAAAGAC
AATTTTCTTTATAGTCCCCTGAAGGATATGAAATATTTTGTTTCCCTCAG
AGCACTGACATCACAGTCCTTTACTGCTGCAGGTGATATATTTGGCTCCA
ATTAGTCAG
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGACAAAGGCATATGCATGTTTTG
GCAAACGATGGATACTTTAAAGTAGTCTGTCCACTCTGAGTGAATACTAA
GTTACTAGGCATTAGCTCATCCATCCATCCATCCATCCATCCATCCATCC
ATCCATCCATCCATCCATCCATCCATTTCCATATTTACCTTGCTACCATT
CTTCTAGAACAATAAAAACTTTTTGCATGTAAACTATATGTAAGATTTTG
TAAGGTGATGTGATAAGTACTAGCATGCATGCATTTGAGTCTTTGCATTT
TAGGTAGGGAGCTTAGGCTATAACAGTTTATGTATTGGGTAACTATACAA
CTATCCGGAAAGTAAGTTATACTGGGATATGTAATATGGAACATGCCAAA
TGCTGCTGTATTTGAGTGAGAGGAAAATCATATATAGACTGGTGAAGAAA
GAGAGTGCTTGAAAACTAATGAAAGTTATGGTAAATAAAATGGGGTTGGA
GTCTTCAGGAGCTTTGGTGGGGAAGATGAGTATTGTTAGGCTGCTCTGTG
GATGGCAGATAACTTTAGGGAATGCTTACAAGGAAGATCCATAAGCTCCT
CAAATAACAACGTGTGGGCAATTACAAAATCAATATAAGTATATAAGCAG
GATCATAATAGAATTTCATGCCGAGAAATAAGTGAGATTATAGAGAGCCT
TAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_h17.b1 MSMg01no452_h17.b1 CHROMAT_FILE:
MSMg01no452_h17.b1 PHD_FILE: MSMg01no452_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:03 2005
         (678 letters)



>mm_chr8_68761290_68762367
          Length = 1078

 Score = 1268 bits (656), Expect = 0.0
 Identities = 671/676 (99%), Gaps = 2/676 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcattaattatctcaccaaaaattaaaaaatattattaaatttgtattctaaactttaaa 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 204 tcattaattatctcaccaaaaattcaaaaatattattaaatttgtattctaaactttaaa 263

                                                                       
Query: 64  tttcaaataccattgcattatgttattttagtacttcgatgtcctgttttatgctgttca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcaaataccattgcattatgttattttagtacttcgatgtcctgttttatgctgttca 323

                                                                       
Query: 124 attcatcttagaatcttcttgataattctaagatgcttgtctccactgctgcatccaatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcatcttagaatcttcttgataattctaagatgcttgtctccactgctgcatccaatg 383

                                                                       
Query: 184 ctttcatttatcttattaaacacattgaacatatgacttgtcttgcagtgtcagaattca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttcatttatcttattaaacacattgaacatatgacttgtcttgcagtgtcagaattca 443

                                                                       
Query: 244 aatcctctgcatgccaaattttagctggagttttatttcctgactcacccacagtgcttt 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagcctctgcatgccaaattttagctggagttttatttcctgactcacccacagtgcttt 503

                                                                       
Query: 304 gtttgtttgtgaattttaggttgtgaatttatatatcttggaatgttacctgtggggatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttgtttgtgaattttaggttgtgaatttatatatcttggaatgttacctgtggggatt 563

                                                                       
Query: 364 gttttgaaggctgaaagaagatttcatcagagagaattcatatttgtttctgccagtatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttttgaaggctgaaagaagatttcatcagagagaattcatatttgtttctgccagtatc 623

                                                                       
Query: 424 ttgggggtactaccagcttgggatcactttaaaataaattctcaacttgaagcattttga 483
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 624 ttgggggtactaccagcttgggatcactttaaaataaattctccacttgaagcattttga 683

                                                                       
Query: 484 tccagctatttaatgtggattcaggctgcctacagttatagattgttaggg-aagagtac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 684 tccagctatttaatgtggattcaggctgcctacagttatagattgttaggggaa-agtac 742

                                                                       
Query: 543 gttctctatcctaagcgtcagcctttgtgaaagacaattttctttatagtcccctgaagg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gttctctatcctaagcgtcagcctttgtgaaagacaattttctttatagtcccctgaagg 802

                                                                       
Query: 603 atatgaaatattttgtttccctcagagcactgacatcacagtcctttactgctgcaggtg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atatgaaatattttgtttccctcagagcactgacatcacagtcctttactgctgcaggtg 862

                           
Query: 663 atatatttggctccaa 678
           ||||||||||||||||
Sbjct: 863 atatatttggctccaa 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no452_h17.g1 MSMg01no452_h17.g1 CHROMAT_FILE:
MSMg01no452_h17.g1 PHD_FILE: MSMg01no452_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:03 2005
         (633 letters)



>mm_chr8_68925903_68926935
          Length = 1033

 Score = 1154 bits (597), Expect = 0.0
 Identities = 619/633 (97%), Gaps = 12/633 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgacaaaggcatatgcatgttttggcaaacgatggatactttaaagtagtctgtccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 tttgacaaaggcatatgcatgttttggcaaacgatggatactttaaagtagtctgtccac 916

                                                                       
Query: 61  tctgagtgaatactaagttactaggcattagctcatccatccatccatccatccatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tctgagtgaatactaagttactaggcattagctcatccatccatccatccatccatccat 856

                                                                       
Query: 121 ccatccatccatccatccatccatccatccatttccatatttaccttgctaccattcttc 180
           ||||||||||||||||||||       ||     ||||||||||||||||||||||||||
Sbjct: 855 ccatccatccatccatccat-------tc-----ccatatttaccttgctaccattcttc 808

                                                                       
Query: 181 tagaacaataaaaactttttgcatgtaaactatatgtaagattttgtaaggtgatgtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tagaacaataaaaactttttgcatgtaaactatatgtaagattttgtaaggtgatgtgat 748

                                                                       
Query: 241 aagtactagcatgcatgcatttgagtctttgcattttaggtagggagcttaggctataac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aagtactagcatgcatgcatttgagtctttgcattttaggtagggagcttaggctataac 688

                                                                       
Query: 301 agtttatgtattgggtaactatacaactatccggaaagtaagttatactgggatatgtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agtttatgtattgggtaactatacaactatccggaaagtaagttatactgggatatgtaa 628

                                                                       
Query: 361 tatggaacatgccaaatgctgctgtatttgagtgagaggaaaatcatatatagactggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tatggaacatgccaaatgctgctgtatttgagtgagaggaaaatcatatatagactggtg 568

                                                                       
Query: 421 aagaaagagagtgcttgaaaactaatgaaagttatggtaaataaaatggggttggagtct 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaggaagagagtgcttgaaaactaatgaaagttatggtaaataaaatggggttggagtct 508

                                                                       
Query: 481 tcaggagctttggtggggaagatgagtattgttaggctgctctgtggatggcagataact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcaggagctttggtggggaagatgagtattgttaggctgctctgtggatggcagataact 448

                                                                       
Query: 541 ttagggaatgcttacaaggaagatccataagctcctcaaataacaacgtgtgggcaatta 600
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 447 ttagggaatgcttacaaggaagatccataagctcctcaaataacaacatgtgggcaatta 388

                                            
Query: 601 caaaatcaatataagtatataagcaggatcata 633
           |||||||||||||||||||||||||||||||||
Sbjct: 387 caaaatcaatataagtatataagcaggatcata 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 13
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)