BAC Information

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BAC

Clone NameMSMg01-453B13
Chromosome8 (Build37)
Map Location 102,392,209 - 102,392,933
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453B13.T7 (MSMg01no453_b13.b1)MSMg01-453B13.TJ (MSMg01no453_b13.g1)
ACCAG540192AG540193
length764750
length of high quality
(start - end)		710 (48 - 757)676 (75 - 750)
definitionCHROMAT_FILE: MSMg01no453_b13.b1 PHD_FILE: MSMg01no453_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:51 2005CHROMAT_FILE: MSMg01no453_b13.g1 PHD_FILE: MSMg01no453_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCACAGAGTTATTGCTACAAAATAAGTCTTGCTTATCAGTAG
TTCTTCATATGATTCCTATTAAAGTGATGATAGAATATGACATAAAGGAA
TATATATACATATATGTATACATGTATATATGTATATATATATGCACACA
TACTTCTGACAATTATATTCTATGTAATCTAATCTCAGTATTAACTAGCA
GTAAAATGGCATTGAAACATTAATGGAGTCATCTCACAAATTTAACATGA
GATTGCCTAATCATAGGATACATGTAGTCTCTGAATTTTAATTATTCTTG
GTTCAACGCAGACAAAAGGATCATTTTCTTTCCACTTACCTTGTCAAATT
CTGCTATTTTATATAGAGTTCAGAACTTGTTTCAAGTACAAGTGGTTTTA
CTTTAAAGCTTTTGATTTTACCACTTGAAAGTGATATTTTATTTTCCTTT
TATTTGGGAGCAAAATGTACATTTTCCCGATGAGTCAAATATGTCTGGCT
CTTCTCCTATAATTTACTCATGGATGAGAATAAGCAGGAGTGATTAGAGC
TGCAAATCAGAAAACTTCAGAGAACCAGAAGCTATCAAAATATGCAGCCT
TAATGAATGATTTTTCACTCATTGCTGTATAGCAATCACCACTGATAACA
CTCTTTCCCTTTTCTCCCAAAGCATATATAATTGAACAAATCATCTGATC
CCCCACAAGCAGCN

NCCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCATATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGGTCTTTCTGTGGTTTTGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAA
TAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACT
CTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTA
ATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAAC
TTGATCCTGATTCAAATTTGGTACCTGGTATCTGTCCAGAAATTTGTCCA
TTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGAT
CTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_b13.b1 MSMg01no453_b13.b1 CHROMAT_FILE:
MSMg01no453_b13.b1 PHD_FILE: MSMg01no453_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:51 2005
         (710 letters)



>mm_chr8_102391863_102392967
          Length = 1105

 Score = 1218 bits (630), Expect = 0.0
 Identities = 692/730 (94%), Gaps = 29/730 (3%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcttcacagagttattgctacaaaataagtcttgcttatcagtagttcttcatatg 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 gaattcttcacagagttattgctacaaaataagtcttgcttatcagtagttcttcatatg 1012

                                                                        
Query: 65   attcctattaaagtgatgatagaatatgacataaagga---------------------- 102
            ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 1011 attcctattaaagtgatgatagaatatgacataaaggattttatatatatatatatatat 952

                                                                        
Query: 103  atatatatacatatatgtatacatgtatatatgtata--tatatatgcacacatacttct 160
            ||||||||| |||||| |||| || ||||||| ||||  |||||||||||||||||||||
Sbjct: 951  atatatatatatatatatatatatatatatatatatatgtatatatgcacacatacttct 892

                                                                        
Query: 161  gacaattatattctatgtaatctaatctcagtattaactagcagtaaaatggcattgaaa 220
            ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  gaca-----attctatgtaatctaatctcagtattaactagcagtaaaatggcattgaaa 837

                                                                        
Query: 221  cattaatggagtcatctcacaaatttaacatgagattgcctaatcataggatacatgtag 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  cattaatggagtcatctcacaaatttaacatgagattgcctaatcataggatacatgtag 777

                                                                        
Query: 281  tctctgaattttaattattcttggttcaacgcagacaaaaggatcattttctttccactt 340
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 776  tctctgaattttaattattcttggttcaatgcagacaaaaggatcattttctttccactt 717

                                                                        
Query: 341  accttgtcaaattctgctattttatatagagttcagaacttgtttcaagtacaagtggtt 400
            ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 716  accttgtcaaattctgctattttctatagagttcggaacttgtttcaagtacaagtggtt 657

                                                                        
Query: 401  ttactttaaagcttttgattttaccacttgaaagtgatattttattttccttttatttgg 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  ttactttaaagcttttgattttaccacttgaaagtgatattttattttccttttatttgg 597

                                                                        
Query: 461  gagcaaaatgtacattttcccgatgagtcaaatatgtctggctcttctcctataatttac 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  gagcaaaatgtacattttcccgatgagtcaaatatgtctggctcttctcctataatttac 537

                                                                        
Query: 521  tcatggatgagaataagcaggagtgattagagctgcaaatcagaaaacttcagagaacca 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  tcatggatgagaataagcaggagtgattagagctgcaaatcagaaaacttcagagaacca 477

                                                                        
Query: 581  gaagctatcaaaatatgcagccttaatgaatgatttttcactcattgctgtatagcaatc 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476  gaagctatcaaaatatgcagccttaatgaatgatttttcactcattgctgtatagcaatc 417

                                                                        
Query: 641  accactgataacactctttcccttttctcccaaagcatatataattgaacaaatcatctg 700
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 416  accactgataacactctttcccttttcttccaaagcatatataattgaacaaatcatctg 357

                      
Query: 701  atcccccaca 710
            ||||||||||
Sbjct: 356  atcccccaca 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1105
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1095
Effective search space:   766500
Effective search space used:   766500
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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