BAC Information

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BAC

Clone NameMSMg01-453I01
Chromosome8 (Build37)
Map Location 103,120,680 - 103,121,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667531, LOC100042069, LOC436054, LOC100042078, LOC100042086
Downstream geneLOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453I01.T7 (MSMg01no453_i01.b1)MSMg01-453I01.TJ (MSMg01no453_i01.g1)
ACCAG540499AG540500
length1,439735
length of high quality
(start - end)		---590 (86 - 675)
definitionCHROMAT_FILE: MSMg01no453_i01.b1 PHD_FILE: MSMg01no453_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:24 2005CHROMAT_FILE: MSMg01no453_i01.g1 PHD_FILE: MSMg01no453_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAAATCAGCGTAAATGTTCTCTTACTTCATGACCCCCTCAGTAACATCG
CGTGGTTATACGCCCGCGCGTCGCCGCCCCCTTCTTATATTACTGCACCG
CGACTGACCGCCTTAAATACGCCGACTTAGNCGCGTACTTCGTGTTTTAC
GTACTACCGCTCGCGGACGCGGAGTGTACGCAAATCGCGTATTGGCGTGC
GAGATTGCTGCGGCATTGTACCGCCGTTTCATATGTGTATAAGGCTTAAT
GCATATGTGCAGCCTACGCACATGCGTAACGCCCGCAATCAGAGCCTTAA
AGATTAATATCCATATCTCGCACCGCTGCATCGTATTCACGCTGTATACT
ATCTCTGTATGCACTTACGGTCGTCGCGGTACTGCTATGGATTATCTTGC
CGGTCTACAACGCGGTCCTTGCCCGCATCCGTGGTAAGTGCTATGAGGGT
GATTGTTCGACAGATACGTGAAGGTTAATACTGCGCGATCGCCACGCGGC
ATTGTATATCGTTTTAATCCACATCTGGAACCACTATAGTCGCACGACAT
CTAGATAATATCTAACGCCAGAGGCAGAAGGACGCGGGCGGAGTCACCGC
ACTCACGTCGAAGTCTGACGTCAACTAATGGATTGTGCGTCACAGTTACT
TGAGTGTTCGCTGCGCGTGGAGATAGGACGAAGTGAGACGTTGGCGCTCA
TCGCTGTTTGTAACTACATGCGTGAGCACTGTGGTGCCAAGTTGTATCGA
CGGCGGTTAAGGTTCAGTGTTGTGTATGTTAGATGCGTACTGAGCGTAGC
TACTCCTCTCTTCGTCTGCTGTTGTCACCAAACCTATGACACGATCTTAT
ACACGACATGTGCGCTGATGTACTATATCGAAGCGAAGCGGCAGGCGTTC
TCTTTACTATACATCTAATTGCTGTTCGTCTACACGTACTTCAGATGCTT
ANGAGTGTGTATTCTTCGGGGAATGACAGGATCGCCCTGTGAACGTCAGT
CGCAGCGTGCTGATATTATGTGGATGAGCCCTCATGTCGCGCTGGCGTAA
TATATANTATGTTGTGTCGTTCTTCTGCACAGTGCNATATGTAGTGTGTA
TTCTTAGTGAGCCGTTCACTATAGTGATGCGTCATGCATCTCAGTATTAT
GTGTTCGAACATGTATATGCTATTGTAGCGACGGAGAGAGGCTGAACTCT
CATCACATTGTGTCAGAGCGCGCCAGTCTCGTAGTACACGGGTGTAGTAC
AAATCAGTCGCACGCGCGCATCGACTATACTGGAGACACGGGATGACGGT
GCCGTACTGTGGTCGACCNACTCGCGCGCTTGACTGCTGTTGTGTATCTC
ACCATCGGCTGCCNTGCAAATGCTTACGTGTGATAGTAAGTGACGTCGCG
ACCGTGTGAGTGGATACTACCAGTCGAGATAATGCGCCN

CCAATNNCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATCTATGGGACT
AGGCATAAGGATATATTCTAATAATTCATAAATAAGGCATTGGAAGAAAT
AATTGCTCCCTAGTGGGTTATGATGCCAAAGTAGGTATAAATAAGAAAAT
ATAGTCTAGTTTAGTTAAATATATATAAAATAAAACTAATTTCACTTAAC
TAAGAATAATAAAAGAAAGTCTAATTGGTTGACTTCCTATTATTATTTGC
TAAAACAGTTACTAATACATGTAAATGCACCCAAGGTTGTGAGAAGTATT
ACAGACATGAAGAAGATAGTTATTTAGTGAAGAATATAAGAAATACTGCT
GCAGCAAGAAATAGTATGGGAAATGTGTCTTCCCTGAAACAATAAATAAA
TGCAGGAAAGCTTTGATGTGAAAGAAAGTAGTGCGACAGAGGCAAAATAC
ACATATAATAATCCACAGAAGATCCTGAGAAATTACATAAGGCACAGGCT
ATGTGAAACACTGTATTTCATGATTGGTTTACTTTTTATAAAAAAAATAT
TTTATTTATTCTTTGAGAAGTCAAACAATATATTTTTTTGCCACTCATTA
TTATCACACGTTTATTATTTAAGACAGTTTTTAACTTAAATATATTTTGA
TCATATTCTTTCCCCCCACAGGTTCTTCCAGATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_i01.g1 MSMg01no453_i01.g1 CHROMAT_FILE:
MSMg01no453_i01.g1 PHD_FILE: MSMg01no453_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:24 2005
         (590 letters)



>mm_chr8_103120423_103121413
          Length = 991

 Score = 1058 bits (547), Expect = 0.0
 Identities = 580/591 (98%), Gaps = 3/591 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcatctatgggactaggcataaggatatattctaataattcataaataaggcattggaag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tcatctatgggactaggcataaggatatattctaataattcataaataaggcattggaag 788

                                                                       
Query: 62  aaataattgctccctagtgggttatgatgccaaagtaggtataaataagaaaatatagtc 121
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 787 aaataattgctccctagtgggttatgatgccaaagtgggtataaataaaaaaatatagtc 728

                                                                       
Query: 122 tagtttagttaaatatatataaaataaaactaatttc-acttaactaagaataataaaag 180
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 727 tagtttagttaaatatatataaaataaaactaatctctacttaactaagaataataaaag 668

                                                                       
Query: 181 aaagtctaattggttgacttcctattattatttgctaaaacagttactaatacatgtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaagtctaattggttgacttcctattattatttgctaaaacagttactaatacatgtaaa 608

                                                                       
Query: 241 tgcacccaaggttgtgagaagtattacagacatgaagaagatagttatttagtgaagaat 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgtacccaaggttgtgagaagtattacagacatgaagaagatagttatttagtgaagaat 548

                                                                       
Query: 301 ataagaaatactgctgcagcaagaaatagtatgggaaatgtgtcttccctgaaacaataa 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 547 ataagaaatactgctgcagcaagaaacagtatgggaaatgtgtcttccctgaaacaataa 488

                                                                       
Query: 361 ataaatgcaggaaagctttgatgtgaaagaaagtagtgcgacagaggcaaaatacacata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 487 ataaatgcaggaaagctttgatgtgaaagaaagtagtgcgacagaggcaaagtacacata 428

                                                                       
Query: 421 taataatccacagaagatcctgagaaattacataaggcacaggctatgtgaaacactgta 480
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tagtaatccacagaagatcctgagaaattacataaggcacaggctatgtgaaacactgta 368

                                                                       
Query: 481 tttcatgattggtttactttttat-aaaaaaaatattttatttattctttgagaagtcaa 539
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 367 tttcatgattggtttactttttataaaaaaaaatattttatttattctttgagaagtcaa 308

                                                              
Query: 540 acaatatatttttttgccactcattattatcacacgtttattatttaagac 590
           |||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 307 acaatata-ttttttgccactcattattattacacgtttattatttaagac 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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