BAC Information

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BAC

Clone NameMSMg01-453M09
Chromosome8 (Build37)
Map Location 28,243,277 - 28,243,644
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf170, Thap1, Zfp703, Erlin2, Prosc, Gpr124, Brf2
Downstream geneRab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik, Gm1698, EG666422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453M09.T7 (MSMg01no453_m09.b1)MSMg01-453M09.TJ (MSMg01no453_m09.g1)
ACCAG540707AG540708
length744748
length of high quality
(start - end)
374 (51 - 424)588 (83 - 670)
definitionCHROMAT_FILE: MSMg01no453_m09.b1 PHD_FILE: MSMg01no453_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:45 2005CHROMAT_FILE: MSMg01no453_m09.g1 PHD_FILE: MSMg01no453_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGCTTCTTGGGCTGACAATGGAGAACGTGCTGTCTTTCC
AGGTGGTTGTTAACTCATTCTCAGCCTTACATTGGAGGGGCAGTGTGAGA
CCAAACAGAAAACTATTAAACAGAGTGCACTCCAGATAGTGTCTTACTAC
CTTCTTCATAAATAAGGGTCCTCTCTTAAGGAGTATAGCTACCTTCTTTA
GAAGATCAATATATTTCCATGCAGCTGATAACAACCACCCCCAAAAGAGG
AAAGATGCTTATTCATCAAAAGAGCCCAGGTGACACAATGACCACGTTCA
TGGTGACTCCTCAGCTAGAAGAGCTAAACCTCGGGAAGACAGAGTTGAGT
AGGCAAGGCTAGCTGCTCCCGGCAGAGTTATAATGAGGAGTGAGATGCCA
TGGGCTTCCTTTGTATCCAATGAGATTGTGTGTTCCCAGAACTATAGTTG
AGAAAAGGGGCAGCTTGCTGACCATAGGCTGTGCTTTGTCTGCCACCCAG
CTGTTTGTCGTTCCCTGCTCTGATGACACTTCCTTCTAAATTTACAAAGA
GGTCTTGGGCCTTGCAAGAATTATCTGCAGAGCAGACACTTCTCTTACAA
CCTTTATTTAGAGGAGCAGTGGTGGTGCACGCCTTTAATCCAGTACTATG
GAGGCAGAGGCAGACAGATTTAATGTGAGTTCGAAAGCAGGCTG
NNCCACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAG
AGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCTAGATATAAGATAT
AATTTGCTAAACACATGAAACTCATGAATAATGAAGACTGAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_m09.b1 MSMg01no453_m09.b1 CHROMAT_FILE:
MSMg01no453_m09.b1 PHD_FILE: MSMg01no453_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:45 2005
         (374 letters)



>mm_chr8_28243073_28243846
          Length = 774

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcttcttgggctgacaatggagaacgtgctgtctttccaggtggttgttaac 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcctgcttcttgggctgacaatggagaacgtgcagtctttccaggtggttgttaac 264

                                                                       
Query: 65  tcattctcagccttacattggaggggcagtgtgagaccaaacagaaaactattaaacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcattctcagccttacattggaggggcagtgtgagaccaaacagaaaactattaaacaga 324

                                                                       
Query: 125 gtgcactccagatagtgtcttactaccttcttcataaataagggtcctctcttaaggagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgcactccagatagtgtcttactaccttcttcataaataagggtcctctcttaaggagt 384

                                                                       
Query: 185 atagctaccttctttagaagatcaatatatttccatgcagctgataacaaccacccccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagctaccttctttagaagatcaatatatttccatgcagctgataacaaccacccccaa 444

                                                                       
Query: 245 aagaggaaagatgcttattcatcaaaagagcccaggtgacacaatgaccacgttcatggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 aagaggaaagatgcttattcatcaaaagagcccaggtgacacaatgaccacattcatggt 504

                                                                       
Query: 305 gactcctcagctagaagagctaaacctcgggaagacagagttgagtaggcaaggctagct 364
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gactcctcagctagaagcgctgaacctcgggaagacagagttgagtaggcaaggctagct 564

                   
Query: 365 gctcccgg 372
           ||||||||
Sbjct: 565 gctcccgg 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)