BAC Information

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BAC

Clone NameMSMg01-454C11
Chromosome8 (Build37)
Map Location 128,688,264 - 128,868,531
singlet/doubletdoublet
Overlap geneSlc35f3
Upstream geneDisc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
Downstream geneLOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454C11.T7 (MSMg01no454_c11.b1)MSMg01-454C11.TJ (MSMg01no454_c11.g1)
ACCAG540997AG540998
length744747
length of high quality
(start - end)
293 (327 - 619)312 (325 - 636)
definitionCHROMAT_FILE: MSMg01no454_c11.b1 PHD_FILE: MSMg01no454_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:15 2005CHROMAT_FILE: MSMg01no454_c11.g1 PHD_FILE: MSMg01no454_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,688,264 - 128,688,556)(128,868,220 - 128,868,531)
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXATACGTACTAAGCCGCGG
AATTCCACCCTTAACTTACAAAACCCGAAATAAATCCTTCCTCTTTTAAG
TAGCTTCCTGTCATGTATTCTCTCACAGCAGTAAGAAAAGTAACAAAGCC
AGACCAGTGAAGAGCCTCACTCAGTGTCCCTCAGGAGAGGTGGCAAATGA
TGTGCCTCTGAGGCAGGCTGTGCCGTGCATTCTAAGCATCACCTTCTGTT
TCTAAGCAAGGATCCCTTGACTAGAGAGACCACCAAGTCTCTCTGTCACC
AACCAGGTAGATGTGTGTGCTGNATCCGGTAAAGCTTAAGGAGGTGAGTG
AGCCTGCTGGTCCACAGTGGTGCTGGGTCTGACAGGGGATTCAAAATTTA
GCTTTCTGAAAACCATCGGCTCCCCAGTGCTGCTTCTGAAGTGAAGATGC
TGCCTAGACCTCCAGAGGCTGCCTTCAAGGTGTCTGATGCCGCCTCAGCT
CTGGGTGAGGCTGCAGAGAGAAAACGAAGGCTGCCCACAGGGACCCCTCA
AATGCTTGCACGAGTGTGGGAACGTGAGGGAAAGAGCGCTCGGCTCCTCA
AACCCTTTCCTTCCATTTGCCAGACTCCACACTGGGCTGGATGGTGGTTG
TTTGCCTTATTGATGGACTTTGTTCTCGAGCCCTTTACACTAGAGTTTCC
CATATCCACATCATTCTGAGATCTAGCATCCTGGACGTCGCTGG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACCAGCAGAAATCTCTCCTTCCTGCTCTGAGATGTGAGC
AAACACCCAGGCAACTGCAGCCGCCCCTACCCCTGCCACAATGCATTCTC
TGAATGTGAGCAGAAATAAGTCCCTCCTCTCTCAGTTGTTCCTTGTCAGA
GGTTTAGTCAGTTACAGGAAAAGCAGCAAATACAAGCTTCTTTAGAATCT
TCTTTGCTTTGTTATATTGTAAGACGAGGTCTCATGTAGCCTGGGCTGGC
TTTGAACTTACTATGTAGTCATTGACAACTTTGAACTGACCCTCCTGTCC
TTCTTCTTGTCTATCTGCCTCATTGGTGCTTAATTACAGCTGCACAACAC
CATACCTCAATGCTCAGTCCTGGGGGACTGAACCCAGGATCTCCTGTGTG
CTAGGCAGTCAAGCTTATAACTGAGCCACATTGCCTGCTCTTCTGGAGTC
TTGCTTCCACCGTGACTGACAGCTCCAAGGCTTCATACCATTGTCAACAC
ACAGGCTACATAGGAGCTTTGACTCTCTGTCTCCCTGACTGTTCCACACA
CCTTCCTCTGGACACATGGTTAACCCAGTGAGAGTTCTGACAGGTTCTTC
TTATTCTTCACAATCCAGCAAGGTGGAACAGGTTTCACCGATCAGTACGG
AGTCCCTTTATTAATCCAGTCAATAGTCACTTCCTTTGTCTTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_c11.b1 MSMg01no454_c11.b1 CHROMAT_FILE:
MSMg01no454_c11.b1 PHD_FILE: MSMg01no454_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:15 2005
         (293 letters)



>mm_chr8_128688064_128688756
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggtaaagcttaaggaggtgagtgagcctgctggtccacagtggtgctgggtctgacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cggtaaagcttaaggaggtgagtgagcctgctggtccacagtggtgctgggtctgacagg 260

                                                                       
Query: 61  ggattcaaaatttagctttctgaaaaccatcggctccccagtgctgcttctgaagtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggattcaaaatttagctttctgaaaaccatcggctccccagtgctgcttctgaagtgaag 320

                                                                       
Query: 121 atgctgcctagacctccagaggctgccttcaaggtgtctgatgccgcctcagctctgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctgcctagacctccagaggctgccttcaaggtgtctgatgccgcctcagctctgggt 380

                                                                       
Query: 181 gaggctgcagagagaaaacgaaggctgcccacagggacccctcaaatgcttgcacgagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctgcagagagaaaacgaaggctgcccacagggacccctcaaatgcttgcacgagtg 440

                                                                
Query: 241 tgggaacgtgagggaaagagcgctcggctcctcaaaccctttccttccatttg 293
           || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaacgtgagggaaagagcgctcggctcctcaaaccctttccttccatttg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no454_c11.g1 MSMg01no454_c11.g1 CHROMAT_FILE:
MSMg01no454_c11.g1 PHD_FILE: MSMg01no454_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:15 2005
         (312 letters)



>mm_chr8_128867854_128868565
          Length = 712

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaactttgaactgaccctcctgtccttcttcttgtctatctgcctcattggtgcttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 acaactttgaactgaccctcctgtccttcttcttgtctatctgcctcattggtgcttaat 619

                                                                       
Query: 61  tacagctgcacaacaccatacctcaatgctcagtcctgggggactgaacccaggatctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tacagctgcacaacaccatacctcaatgctcagtcctgggggactgaacccaggatctcc 559

                                                                       
Query: 121 tgtgtgctaggcagtcaagcttataactgagccacattgcctgctcttctggagtcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtgtgctaggcagtcaagcttataactgagccacattgcctgctcttctggagtcttgc 499

                                                                       
Query: 181 ttccaccgtgactgacagctccaaggcttcataccattgtcaacacacaggctacatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 498 ttccaccgtgactgacagctccaaggcttcataccattgtcaacacacaggctacatagt 439

                                                                       
Query: 241 agctttgactctctgtctccctgactgttccacacaccttcctctggacacatggttaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agctttgactctctgtctccctgactgttccacacaccttcctctggacacatggttaac 379

                       
Query: 301 ccagtgagagtt 312
           ||||||||||||
Sbjct: 378 ccagtgagagtt 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)